-
Dear nnunet community,
I want to use the network_architecture.pdf generated by nnunet to draw the diagram from my research article. Can you please advise me on how to create such a diagram in Late…
-
(MeNeXt) PS E:\PythonProject\MedNeXt> mednextv1_plan_and_preprocess -t 521 -pl3d ExperimentPlanner3D_v21_customTargetSpacing_1x1x1
E:\PythonProject\MedNeXt\mednext\DATASET\nnUNet_raw_data_base\nnUNet…
-
Hi,
I'm trying to finetune nnUNet for a brain tumor segmentation task using pretrained weights from Task082_BraTS2020. My data consists of brain MRI images with 4 input modalities, and the labels m…
-
I tried running the contrast phase detection pipeline:
```bash
bin/C2C contrast_phase -i /data/dicom_dir/
```
This crashes with the following error:
```bash
Inference pipeline:
(1) DicomT…
-
Hi! I'm using a conda environment(which is called Mamba3) to run a Mamba-based models, but when I'm running the models, the error hints that the nnunetv2 package is used from the another environment c…
-
Official docker image would be greatly apprecieted.
We could just pull the image and and start the training right away while connecting nnunet_raw nnunet_results and nnUNet_preprocessed folders as d…
-
I keep getting this error saying a post processing file is missing for the cardiac segmentation sample.
WARNING! Cannot run postprocessing because the postprocessing file is missing. Make sure to …
-
Hi, first of all thank you for this wonderful software. I was trying to use it on the VerSe database, specifically on this version [here](https://osf.io/nqjyw/). I have tried to run moosez in:
- my d…
puccj updated
1 month ago
-
Hello, can I use nnunet to do classification based on segmentation result? Then what should I do with the data, cause the default label should be image, I want to have label with both image and number…
-
Dear nnUNet - team,
I have trained a model on a cluster, but due to time constraints this training was aborted. I wanted to continue it by adding the --c flag to my SLURM-script:
`CUDA_VISIBLE_D…