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When executing the following python code on my idle:
model = fast.DataHub().download('nuclei-segmentation-model')
I get the following error:
RuntimeError: Failed to retrieve data from FAST DataHub.…
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Great article that summarizes 10+ papers on object segmentation:
http://blog.qure.ai/notes/semantic-segmentation-deep-learning-review
Curated list of papers / blog posts / resources:
https://gith…
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I am trying out using Mesmer for segmentation through the Bodenmiller steinbock/IMCRtools pipeline and applying it on human kidney tissue samples. I am finding that using the default training data for…
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Dear Zhi,
Thank you for sharing this amazing work! I have installed the repo following your instructions and was able to reproduce you showed in the YT video with the provided experimental data.
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Hi, thanks for sharing your great work! I have a problem about reproducing the results on Consep dataset. For stage2, it's easy to obtain a result close to the one post in paper (like dice 0.83, origi…
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When running tissue segmentation (red) followed by nuclei segmentation (green) the segmentation color for the nuclei segmentation changes from green to red after inference. If I change the color of on…
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Ran into this error on Xenium data. Had to preprocess Xenium data extensively to get it to be compatible with Baysor, but still throwing an error. Seems to be related to some kind of unexpected negati…
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if not manually set, the default color for segmentation is green. (so far so good)
1) if I click on export or upload the geojson, it does not contain the color if all the same nuclei have the same …
tdefa updated
3 years ago
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A couple of cool examples of napari, which is brilliant to display labels and annotate images.
https://napari.org/tutorials/applications/annotate_segmentation
https://napari.org/tutorials/gallery#…
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Hello!
Thank you for the tool. I am interested in trying this tool on my own data. I have 2D image data and Stereo-seq data, but no cell type reference file. The image size is (1200,1200).
My q…