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I want to assemble metagenomic data on a cluster-server.
Is it possible to use IDBA-UD in connection with MPI-Parallelization, Torque PBS or OpenMP?
Thanks,
david
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We need to port existing `CUDA` code [from this repo](https://github.com/kerrpy/kerrpy) to Cython. The components to port are the following:
- [x] [Runge-Kutta solver](https://github.com/kerrpy/ker…
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The parallelization in the reduce_parallel function could be improved by substituting python `multiprocessing` with the Cytoh OpenMP backend.
S. also https://cython.readthedocs.io/en/latest/src/userg…
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Hello,
I am trying to run NFFT inside parallel MP process. It runs very slow compared to serial mode. I wonder if there is somewhere default parallel option on in NFFT which I suppose to turn off t…
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I can't find this in older issues, but: shouldn't all of the recon-all call include the new`-parallel` switch prior to `-openmp`? I dont' see that being used in the log files, and this might speed up …
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Hi gabyx. Thanks for offering your work. It is valuable for me.
Can you offer the reference paper of your implementation? I think it would be helpful to understand your code by my own. Question 2 is -…
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Hi,
I want to speedup octomap using OpenMP. I created a small test application where I simply insert a point cloud using insertPointCloud().
However, even for 1000 000 points I can not really m…
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Dear jjonkman,
![报错](https://github.com/OpenFAST/openfast/assets/156583319/7aa3f10c-50b2-4d8c-84f7-32d2dbc80f0c)
I used FAST.Farm to calculate 16 wind turbines, the first 10 of which came out norm…
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### What institution are you from?
GCST
### Description of the problem
The new GEOS-Chem Classic parallelization test capability (see PR #1565 and PR #1636) has revealed that some GEOS-Chem Class…
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I began to seriously consider implementing pycold for the Windows platform, as it is the need from several other users and also for a geospatial course I am currently developing.
I copied the parag…