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Hi, thank you for the great tool.
I installed MiFish in a new conda environment as recommended. While testing with `mifish seq mifishdbv3.83.fa -d seq2`, I got an error during `Step 5: Phylogenetic A…
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Hello, I am facing a problem on v1.0.4 of genespace.
When I ran `gpar
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/YuLab-SMU/ggtreeExtra
Confirm the following by ed…
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**Description**
After running `bactopia download --build-all envtype conda`, I get an error that the environment cannot be solved.
**Steps to Reproduce**
Steps to reproduce the behavior:
```
(b…
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Example: https://mila.quebec/en/publications/
It would be nice to reuse the same code as in the Mila website. Not sure if that's 'easily' possible via RTD
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Recently my fetches of https://cog-uk.s3.climb.ac.uk/phylogenetics/latest/cog_all.fasta have been repeatedly failing. Even with multiple "curl -C -" commands to continue at the offset where the previ…
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**Description**
Hello @rpetit3 ,
We are currently using the `shigeifinder` wf in the bactopia tools, but it stucks for many hours. Please find the logs below.
> (base) gilmansiu3@gilmansiu3-Z49…
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We should find a way to make phylogenetic data (a.k.a. trees) part of CLDF. With such a specification, we could generically support tools like
https://camayal.info/wa/treetom/
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laying the keel for the new project.
plugin skeleton, get ABrowse demo data running inside JB2