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https://github.com/datacarpentry/python-ecology-lesson/blob/73b8d44446812d8ec45a054077dcfb34724de946/setup.md?plain=1#L145
The setup includes installation of Jupyter along with `plotnine`, but if l…
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**Describe the bug**
Calling ggplot in plotnine triggers dependency errors, due to incompatible versions of pinned packages.
**Steps to reproduce**
1. Creat a new Jupyter notebook.
2. Run the co…
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I was interested in the description of Gleam, but disappointed that the project seems to have been left at a Python 2 implementation.
I made a fairly small number of changes to get Gleam to work wi…
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The code currently gives this warning:
```
/fh/fast/bloom_j/software/miniconda3/envs/dms-vep-pipeline/lib/python3.11/site-packages/dms_variants/codonvarianttable.py:1779: FutureWarning: In a future …
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Polars https://www.pola.rs/ is a nice data frame library for python.
It would be great if plotnine would also support polars instead of pandas data frames.
My current workaround is:
```
plotn…
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Hi,
I wanted to test your library, but unfortunatly, I cannot load it as it throws an ModuleNotFoundError:
```
>>> import plotnine3d
Traceback (most recent call last):
File "", line 1, in
…
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`liana.pl` currently relies on plotnine. While I chose this library due to how convenient it is to generate plots (and consistency with ggplot2), it's incompatibility with matplotlib is a drawback.
…
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I'm quite sure this is an issue of scikit-misc so I file it here.
I ran into the following why doing plots with https://github.com/has2k1/plotnine.
```python
#!/usr/bin/env python3
import nump…
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### What is your suggestion?
In the code below, we combine columns into an array by passing them as a list inside the JS expression string. This is not possible to replicate with a python expression …
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CP257 errored as described in broadinstitute/pooled-cell-painting-profiling-recipe#73
```
All sites complete.
Summarizing 4684 sites in batch: 20210422_6W_CP257.
/home/ubuntu/miniconda3/envs/poo…