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tbl2asn has been replaced with table2asn. tbl2asn is no longer available for download as of 18 June 2024.
https://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/README
The new r…
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Hello,
I am working on identifying potential PULs in my metagenomes. I've run my dereplicated bins through prokka and dbCAN. I have uploaded the fasta file and prokka annotation to Geneious which …
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When using the passthrough argument feature (e.g. by setting prokka's --kingdom argument to "archaea") on a fresh installation of CompareM2, the following error message might show:
```
$ comparem2…
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I'm trying to install prokka on a linux server with the following specifications:
- Python version 3.11.7
- Perl version 5.38.2
- OS: Rocky Linux 8.9 (Green Obsidian)
For the installation I trie…
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Hi! Probably doing something wrong here, but left bug in title just-in-case :)
**The Error**
```
--------------------------------------------------------------------
ERROR ~ Required parameter…
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The version of prokka that is specified in the meta.yml file produces output with the string "dbxref" which is incompatible with tbl2asn and will cause it to error non-zero with the message:
```
[00…
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Hi, I am trying to render a map of a plasmid that has been annotated using Prokka.
When I try to do so I get the following error:
Error in if (length < arrow_width) { :
missing value where T…
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Hi,
I am installing prokka in several ways but it show following error:
###Tried these different ways to install prokka:
sudo apt install prokka
conda install -c conda-forge -c bioconda -c d…
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Hallo.
Can you help me?
anna@anna-G3-3590:~$ prokka
Name:
Prokka 1.14.5 by Torsten Seemann
Synopsis:
rapid bacterial genome annotation
Usage:
prokka [options]
General:
--help …
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I have been using mitochondrial annotation to teach prokka to a master class very successfully for the last few years - the mtDNA annotates very successfully and very fast so that the students can see…