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linnabrown
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run_dbcan
Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
http://bcb.unl.edu/dbCAN2
GNU General Public License v3.0
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dbcan 3 start from raw data,I got some problems with step 13 dbcan_utils to calculate the abundance of CAZyme families, subfamilies, CGCs, and substrates
#180
powerby66
opened
1 week ago
0
dbcan_utils CGC_substrate_abund and dbcan_utils CGC_abund error
#179
Ben-41
opened
2 weeks ago
18
Newest version of dbcan not available on PyPI
#178
nuzhathoque
opened
1 month ago
0
cgc predict fail
#177
Panda-smile
opened
1 month ago
0
4.x
#176
HaidYi
closed
1 month ago
0
merge 4.x new features
#175
HaidYi
closed
1 month ago
0
fam-substrate-mapping.tsv missing
#174
cmkobel
opened
2 months ago
0
meaning of repeated substrates
#173
CamiAgustini
opened
2 months ago
4
How to summarize dbCAN3 results
#172
NishatTamana51
opened
2 months ago
1
Missing table headers in output file
#171
HuangLoong
closed
2 months ago
2
No hits from DIAMOND
#170
JosieMainwaring
opened
3 months ago
18
Dockerfile not using latest version?
#169
miraep8
opened
3 months ago
3
Are the latest CAZyme annotations using eukaryotic genomes sequences included in the run_bdcan databases ?
#168
Balaveer
closed
4 months ago
2
Update utils.py
#167
Xinpeng021001
closed
2 months ago
0
Bug in ReadBedtoos function
#166
phingchian
closed
2 months ago
2
Visualizing dbcan gff output using Geneious
#165
SevanEsaian
opened
4 months ago
4
Website down?
#164
adityabandla
closed
2 months ago
3
thread creation failed Fatal exception (source file esl_threads.c, line 139): thread creation failed
#163
Panda-smile
closed
1 month ago
3
No module named 'dbcan_cli' when running dbcan_plot
#162
zhonglinma
closed
2 months ago
2
finding %completeness of CGC in the microbial genome of interest <Theory question and suggestions>
#161
Jigyasa3
opened
4 months ago
2
Missing Header in dbcan-sub output
#160
cristianrohr
opened
5 months ago
10
can't find the dbcan_utils
#159
WeiweiguoGuo
opened
5 months ago
5
CircleCI Commit
#158
linnabrown
closed
5 months ago
0
3.x
#157
linnabrown
closed
5 months ago
0
3.x
#156
linnabrown
closed
5 months ago
0
UnboundLocalError: cannot access local variable 'gene' where it is not associated with a value
#155
tgurbich
opened
5 months ago
3
3.x
#154
linnabrown
closed
5 months ago
0
Update 3.x into 4.1.2 version
#153
HaidYi
closed
5 months ago
0
DIAMOND version error
#152
AntoniaFeilden
closed
5 months ago
9
High Load Issue: dbcan_sub Creating Excessive Threads
#151
trx296554555
closed
5 months ago
2
add Wastyk2021 dataset to doc
#150
HaidYi
closed
5 months ago
0
dbsub.out matches multiple hits per Gene.ID. Do we keep all or the best hit?
#149
Jigyasa3
opened
5 months ago
2
output explanations
#148
CamiAgustini
opened
5 months ago
3
3.x
#147
linnabrown
closed
6 months ago
0
3.x
#146
linnabrown
closed
6 months ago
0
3.x
#145
linnabrown
closed
6 months ago
0
3.x
#144
linnabrown
closed
6 months ago
0
3.x
#143
linnabrown
closed
6 months ago
0
3.x
#142
linnabrown
closed
6 months ago
0
dbcan 3.x development
#141
HaidYi
closed
6 months ago
0
Database update but code not update
#140
trx296554555
closed
6 months ago
2
multiple genomes in one file or separate files?
#139
Jigyasa3
closed
6 months ago
2
output explanations for "diamond.out", "hmmer.out","dtemp.out","overview.txt"
#138
Jigyasa3
opened
7 months ago
6
The website may be wrong?
#137
Lyang556
closed
7 months ago
2
Question: what does the magic number "5" means?
#136
Hocnonsense
closed
6 months ago
2
Updated PUL.faa file
#135
jlubin24
closed
5 months ago
6
Memory issues and restart procedure
#134
aghozlane
closed
7 months ago
2
Errors in database
#133
Russel88
closed
6 months ago
5
Different substrate annotations in dbCAN-PUL and run_dbcan4
#132
Russel88
opened
8 months ago
2
V12?
#131
ccgallen
closed
9 months ago
2
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