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linnabrown
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run_dbcan
Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
http://bcb.unl.edu/dbCAN2
GNU General Public License v3.0
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dbCAN_sub error (#2)
#130
jgrembi
closed
5 months ago
3
dbCAN-sub error
#129
typhainepl
opened
10 months ago
9
Explanation for docker command
#128
blueevee
closed
9 months ago
3
Interpretation of output results
#127
MonaLiu421
closed
6 months ago
8
dbCAN-sub error
#126
chandnisidhu
closed
11 months ago
2
dbsub.out multiple lines for the same gene_id
#125
ScaonE
opened
11 months ago
1
IndexError in CGC-Finder
#124
Rob-murphys
closed
10 months ago
12
protein sequence output file
#123
graciegracekk
opened
11 months ago
3
doubt on substrate prediction
#122
MuthusaravananS
closed
5 months ago
3
Hardcoded "--cpu 5" in run_dbcan.py
#121
cmkobel
closed
6 months ago
3
How to visualize output files from run_dbcan
#120
nina-microbiology
opened
1 year ago
0
Install package conflict Mac M1
#119
Daironbio
opened
1 year ago
1
Add hmmsearch option that use hmmsearch instead of hmmscan
#118
chtsai0105
closed
10 months ago
11
dbcan_sub will create tons of subprocesses
#117
chtsai0105
opened
1 year ago
8
PUL annotation question
#116
LuckyFeiX
opened
1 year ago
2
Inquiry regarding the interpretation of 'overview.txt'
#115
jylee324
closed
1 year ago
2
There is NO need to add run_dbcan in docker run command
#114
bladrome
opened
1 year ago
2
multithreads options in standalone tool
#113
chtsai0105
closed
1 year ago
1
Database link not working
#112
hassantarabai
closed
1 year ago
3
CGC-JSON error
#111
joeyclancy
opened
1 year ago
8
Question about Docker Hub image versions
#110
willburden
closed
1 year ago
1
Add all of the valid CGCFinder options to allow for dbCAN-seq replication
#109
AaronAOliver
closed
1 year ago
0
Formulate overview table from existing output without the need to rerun the analysis
#108
nohayoussef
closed
1 year ago
4
docker update - biocontainer for latest version of run_dbcan
#107
danilodileo
closed
1 year ago
6
How to harmonize output
#106
SilasK
opened
1 year ago
6
Question: why hmmscan and not hmmsearch
#105
SilasK
closed
5 months ago
2
Roadmap
#104
SilasK
opened
1 year ago
7
Diamond+CAZY analysis for mRNA reads
#103
sumitra20
opened
1 year ago
6
Aborted run following CGC-Finder start ?
#102
harfeorth
closed
1 year ago
5
Fixes and conda packaging for run_dbcan
#101
AlexSCFraser
closed
1 year ago
1
Incorrect tool label `dbCAN_sub` on the dbCAN server
#100
HobnobMancer
closed
1 year ago
3
SignalP Installation and Program Run Question
#99
lherold1
closed
2 years ago
5
SignalP Installation and Program Run Question
#98
lherold1
closed
2 years ago
0
Signal peptide predictions in run_dbcan3
#97
julipeale2001
closed
1 year ago
7
Bug fixed
#96
QiweiGe
closed
2 years ago
3
Update run_dbcan.py
#95
QiweiGe
closed
2 years ago
0
Update run_dbcan.py
#94
QiweiGe
closed
2 years ago
0
Docker image does not contain recent eCAMI bug fixes
#93
mperisin-lallemand
closed
2 years ago
1
[Errno 2] No such file or directory: 'output_EscheriaColiK12MG1655/hmmer.out'
#92
RinaYona
closed
2 years ago
3
fix default eCAMI db_type
#91
pooranis
closed
2 years ago
1
FASTA format error: Missing '>' at record start
#90
rpaul5
closed
1 year ago
6
Access to database: This repository is over its data quota.
#89
Sebastien-Raguideau
closed
2 years ago
2
ModuleNotFoundError: No module named 'dbcan.utils'
#88
rishibhandari63
closed
1 year ago
2
Error: Error reading input stream at line 51600321: Invalid character (ASCII 0) in sequence
#87
Betula0422
closed
2 years ago
6
New output how to interprate multiple ECs
#86
Rob-murphys
closed
1 year ago
1
--hmm_cpu doesn't work
#85
PandengWang
closed
5 months ago
3
error when using --out_pre argument
#84
szimmerman92
closed
2 years ago
3
Dev
#83
HaidYi
closed
2 years ago
0
Dev
#82
HaidYi
closed
2 years ago
0
run_dbcan hotpep output contains non-existent EC numbers
#81
Rob-murphys
closed
2 years ago
9
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