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linnabrown
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run_dbcan
Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
http://bcb.unl.edu/dbCAN2
GNU General Public License v3.0
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ModuleNotFoundError: No module named 'dbcan.utils'
#88
rishibhandari63
closed
2 years ago
2
Error: Error reading input stream at line 51600321: Invalid character (ASCII 0) in sequence
#87
Betula0422
closed
2 years ago
6
New output how to interprate multiple ECs
#86
Rob-murphys
closed
2 years ago
1
--hmm_cpu doesn't work
#85
PandengWang
closed
8 months ago
3
error when using --out_pre argument
#84
szimmerman92
closed
2 years ago
3
Dev
#83
HaidYi
closed
2 years ago
0
Dev
#82
HaidYi
closed
2 years ago
0
run_dbcan hotpep output contains non-existent EC numbers
#81
Rob-murphys
closed
2 years ago
9
If using a pre annotated metagenome shall we use input type protein?
#80
Rob-murphys
closed
2 years ago
5
error while running CGCFinder
#79
1023011930
closed
2 years ago
3
Tools param (-t) breaks run_dbcan v2.0.11
#78
acvill
closed
8 months ago
3
README lists incorrect argument names
#77
acvill
closed
3 years ago
1
More Explanation for the CGC-finder output?
#76
BinhongLiu
closed
8 months ago
2
DIAMOND not working, HMMER and Hotpep unaffected
#75
Itallia
closed
3 years ago
2
How to get bit score in the hmmer output?
#74
mairaverner
opened
3 years ago
0
Wrong with the output of dbCAN
#73
zhibaosuo
opened
3 years ago
2
What are "Camers" in the hotpep README
#72
Rob-murphys
opened
3 years ago
1
Database installation
#71
mverner
closed
2 years ago
7
Interpret Hotpep output
#70
masun
opened
3 years ago
2
Questions about results
#69
Anqi-Dai
closed
3 years ago
1
Questions about running time and different version of the same cazy families
#68
Anqi-Dai
closed
3 years ago
4
if row[2] == "CDS"
#67
LuDeChen
closed
3 years ago
4
Update to use new version of databases
#66
ghost
closed
2 years ago
0
Error running .fna files
#65
edisagarcia
closed
3 years ago
1
Is it possible for dbCAN to output the protein sequence of CAZyme hits?
#64
namsca
closed
3 years ago
2
dbCAN hmm databased not found
#63
Francesca87
closed
3 years ago
16
Predict PULs with cgc.out?
#62
ehutchison2
closed
3 years ago
1
More explanations of the output files
#61
iaunicorn
closed
3 years ago
5
FileNotFoundError: [Errno 2] No such file or directory: 'CGCFinder.py'
#60
justinshaffer
closed
3 years ago
2
Possible to use conda installation with v9 databases?
#59
justinshaffer
closed
3 years ago
1
gff parsing
#58
catrinehom
closed
3 years ago
8
Module not found error
#57
catrinehom
closed
3 years ago
3
fungus fungus error
#56
jianshu93
opened
3 years ago
1
--cgc_sig_genes {tp,tf,all}
#55
LuDeChen
closed
3 years ago
3
Skip the prodigal step?
#54
BinhongLiu
closed
3 years ago
1
pip install run-dbcan==2.0.11 not working
#53
Juliana-Soto24
closed
3 years ago
4
View the output and cross-reference
#52
lalalagartija
opened
4 years ago
0
dbcan with unassembled metagenomic sequence
#51
ShriramHPatel
closed
4 years ago
7
CGC-Finder only works with fna input
#50
szzxpxf
opened
4 years ago
20
hmmscan not effective, use hmmsearch?
#49
erikrikarddaniel
closed
4 years ago
6
non-redundant version of CAZyDB.07312019.fa
#48
fujch7
closed
4 years ago
1
db version
#47
fujch7
closed
4 years ago
1
CGCFinder output header
#46
sandragodinhosilva
closed
4 years ago
2
CGC-Finder Error: list index out of range
#45
szzxpxf
closed
4 years ago
7
HotPep temp dir
#44
sjanssen2
closed
4 years ago
7
pip installation
#43
sjanssen2
closed
4 years ago
3
Annotation conflict from CAZyme and TC
#42
Li-Dongyao-ancore
closed
4 years ago
5
Update CGCFinder.py
#41
Li-Dongyao-ancore
closed
4 years ago
1
Different Hotpep File Not Found error
#40
jfoldi81
closed
4 years ago
3
hmmprofile syntax brokenn in cazyhmmer.out
#39
Neato-Nick
closed
4 years ago
1
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