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linnabrown
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run_dbcan
Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
http://bcb.unl.edu/dbCAN2
GNU General Public License v3.0
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File not found error with Hotpep
#38
jaube
closed
4 years ago
16
Updated dbcan dependencies resulted in less cazy being detected with the hotpep tool.
#37
Rob-murphys
opened
4 years ago
2
Suggestion to change "Gene ID" column name in overview.txt
#36
Rob-murphys
closed
4 years ago
1
Duplicate entries in CAZyDB.07312019.fa
#35
zeyaxue
closed
4 years ago
1
Missing metadata for CAZyDB.07312019.fa
#34
aleu785
closed
4 years ago
6
Mis-spelling "comlete" should be "complete"
#33
dadahan
closed
4 years ago
3
Does dbCAN reduce the information output by both Hotpep?
#32
Rob-murphys
closed
4 years ago
30
Dabatase error
#31
Rob-murphys
closed
4 years ago
0
some minor problems in the updated run_dbcan.py
#30
Li-Dongyao-ancore
closed
4 years ago
3
Update run_dbcan.py
#29
Li-Dongyao-ancore
closed
4 years ago
0
Using not all tools results in error
#28
VGalata
closed
4 years ago
2
hmmscan-parser.py retaining multiple hits to same protein
#27
adityabandla
closed
4 years ago
11
How to get the relative abundance table?
#26
HNUmcc
closed
4 years ago
3
meta vs. prok
#25
lis4matilda
closed
4 years ago
9
error in preparing overview table
#24
lis4matilda
closed
4 years ago
2
NameError: name 'hotpep_genes' is not defined
#23
FranckLejzerowicz
closed
4 years ago
4
TypeError: unhashable type: 'slice'
#22
jasmineliang
closed
4 years ago
9
db/ ERROR: The database directory does not exist
#21
lifadeng
closed
4 years ago
1
FileNotFoundError: [Errno 2] No such file or directory: 'train_many_organisms_many_families.py' error
#20
songweizhi
closed
4 years ago
2
Packaging with setuptools
#19
tesujimath
closed
5 years ago
6
Improve packaging and distribution
#18
tesujimath
closed
5 years ago
2
Please add a license
#17
tesujimath
closed
5 years ago
1
This repo violates the license for signalp
#16
tesujimath
closed
5 years ago
1
database setting
#15
ucassee
closed
5 years ago
15
File not found
#14
susheelbhanu
closed
5 years ago
11
Multiple errors finding sequence files
#13
singhbhavya
closed
5 years ago
4
NameError: name 'arr_hotpep' is not defined
#12
windtalker6
closed
5 years ago
1
docker error
#11
mimhmw
closed
8 months ago
29
Visualizing CGC_Finder output
#10
shigdon
closed
4 years ago
1
Sequence limit reached
#9
TlaskalV
closed
5 years ago
4
hello can you help me?
#8
byeollee
closed
5 years ago
2
Parameters issues
#7
BenedicteColnet
closed
5 years ago
4
CGC finder issue
#6
Russel88
closed
5 years ago
2
No File error
#5
khuch123
closed
5 years ago
22
Hotpep issue
#4
mpunzalan
closed
5 years ago
8
Secondary keys not unique in tf-2.hmm
#3
mpunzalan
closed
5 years ago
5
metadata file linking to taxonomy for the latest release.
#2
raw937
closed
4 years ago
7
i don't solve this problem
#1
byeollee
closed
5 years ago
17
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