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I was trying to make metagene plot of my two bam files over mm9 promoters. I tried:
```
>promoterMnase_bammg_prmoter_mnase mg_prmoter_mnase mg_prmoter_mnase$plot()`
produce data table : ChIP-Seq
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Hi,
First of all, thank you so much for sharing such an amazing analyzing tool for us.
I believe ActiveDriverWGS can help and move my project forward.
I think I can prepare equivalent files of "c…
FL512 updated
11 months ago
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@singha53 @santina @ppavlidis @farnushfarhadi
We were looking at some principal component analyses between cell types for our DNA methylation data. The RnBeads analysis has differentiated the regi…
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Hi dinhdiep,
I'm very interested in your work and want to conduct methylation haplotype analysis on my bisulfite sequencing data. I am having trouble generating CpG haplotype files using your code.…
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Good day,
I would like to perform Differential methylation scoring.
Is there a way to identify the number of hypo and/or hyper differentially methylated regions in introns, exons, promoters, TSS, 5′…
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Hi everyone,
I have a question about the difference between --h2 and --h2-cts flags. I know that h2-cts is used to partition heritability to cell-type-specific annotations and LDSC performs a one-s…
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Hello dev team,
Thanks for the amazing tool. I would like to understand the TFinfo and Base GRN files a little bit better.
The TF info file looks like this: What are these factors_direct and fa…
momur updated
6 months ago
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Hi, I have a couple of questions regarding ELMER v2. In the section find significant gene-probe pairs, the output file contains a distance column, which is supposed to be the distance from the probe t…
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Hi,
I wanna know if this tool can be used for drosophila samples? Like the -n parameter, can it identify genes from different species or the FlyBase gene ID?
Thanks!
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Weronika and I discussed preliminary results and possible conclusions from the quantseq analysis on 16/08/21.
**Objectives from the Quantseq Analysis**
1. Show that the most common isoform length …