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Hello,
Just wondering if you could kindly point me to the implementation of the HP model you used for folding the proteins. From what I can tell these were pre-computed, but I'm not 100% sure.
T…
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Apparently the MainChain visualization does not work.
Main chain means only the N-CA-C atoms of every aminoacid. Sometimes it is good to see only these atoms, to get an idea of the general folding of …
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ETA: 2023Q2
Issue: Academic users will often frame their python code within a Jupyter notebook. Examples:
- [Notebook Estimate](https://github.com/parente/nbestimate) (simpler code)
- [Deep Blind W…
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**Describe the problem**
It would be great to add the large molecule fluorescent protein task introduced [here](https://arxiv.org/abs/2203.12742) as a molecular generation oracle. Code is available […
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I am reading the biorxiv preprint and I understand I could use the CARP models to predict/calculate stability and melting temperature from a query protein sequence? Would it be possible to have a util…
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**Youtube**
- [x] [AlphaFold2, OpenFold, Protein Language Models and Beyond | Nazim Bouatta](https://www.youtube.com/watch?v=ON1ltprZKPo) from Molecular Modeling and Drug Discovery (M2D2) 2022
- […
kntkb updated
5 months ago
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* **PTHR ID & PTN node:**
PTN000385050 (PTHR15004)
* **Sequences with problematic annotation (ID + gene/protein name):**
Fly GatC (FBgn0064115)
Fly GatA (FBgn0260779)
Fly GatB (FBgn0039153)
…
sjm41 updated
2 months ago
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Defect Description : When we click on hyperlink "The use of circular dichroism spectroscopy to study protein folding, form and function" by Daniel H under Further Readings option an error is display…
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**Is your feature request related to a problem? Please describe.**
Need to read in information about Amino Acids in order to create simulated protein folding scenarios
**Describe the solution you'…
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hi, I trained openfold and use the ckpt to test sequence, but it was not correct, lots of atoms overlapped together
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