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I installed localcolabfold and copied HighFold git repo into my localcolabfold.
So that my localcolabfold git repo looks as
![Screenshot 2024-06-25 at 5 29 04 PM](https://github.com/hongliangduan/…
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- [ ] add a legend
- [x] set a consistent color scale across all time points, so they are comparable
- [ ] make color gradient customizable, to fix dynamic range
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Add protein structure descriptors as structure-level feature sets that can be pre-loaded.
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Hello everyone!
I've been working on a project where it would be very cool to have more protein structures rendered in the same viewer simultaneously but as individual objects. I would also like to…
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Hey i am working on a GoMartini structure of my protein and i recognized that if a use my coarse-grained protein structure, which i made with martinize2, insane.py counts the virtual CA beads into the…
qoraj updated
3 weeks ago
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Hi, I have the following problem.
I want to create a simulation in which, in addition to the protein structure, there are several different small ligands. For this purpose, to assign them a force fie…
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Hi tfold team,
I applied tFold-ag to the AbDB dataset, and while it performs well on some proteins, I encountered difficulties predicting other proteins. Upon inspecting the predicted structures, …
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Hi @bcov77,
I'd like to kindly ask your insight in complex docking task I'd like to achieve.
I have predicted an RNA structure (e.g. nstruct=50) from sequence (~80b) w/ and w/o specifying the R…
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[Class `ProteinEmbedding`](https://github.com/scikit-bio/scikit-bio/blob/545c9859635a5b8514bd9fd599475717c533f108/skbio/embedding/_protein.py#L29-L121) implements a data structure for the storage of p…
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Dear author,
Thank you very much for your great contribution to the community and I am very interested in your research! However, it is a great pity that when I reproduced your work, I found t…