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BorgwardtLab
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proteinshake
Protein structure datasets for machine learning.
https://proteinshake.ai
BSD 3-Clause "New" or "Revised" License
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pypi license fix
#275
cgoliver
closed
4 months ago
0
Miss match of sequence length, residue_number and residue_type
#274
zpengmei
closed
4 months ago
4
Structure Similarity Task training
#273
ahariri13
opened
6 months ago
1
Dependency on rdkit-pypi prevents installation of version above 0.2.1
#272
luiswyss
opened
6 months ago
1
Integrate time benchmarking for transforms
#271
timkucera
opened
7 months ago
0
Handling of multiple rotamers in PDB files
#270
lucasmiranda42
opened
7 months ago
2
preprocessing: relaxation
#269
timkucera
opened
7 months ago
0
Structure Relaxation
#268
timkucera
opened
8 months ago
0
Could you provide the script for building structure-similarity splits?
#267
LTEnjoy
closed
9 months ago
1
Type of Family Classification Dataset
#266
mahdip72
closed
10 months ago
1
Substrate/Product data for Enzymes
#265
jozhang97
closed
10 months ago
2
Add drug-target interaction task
#264
pjhartout
opened
12 months ago
0
fix typo virtual screen
#263
pjhartout
opened
12 months ago
1
schedule test workflows regularly
#262
timkucera
opened
1 year ago
0
replace str.rstrip with str.removesuffix
#261
timkucera
opened
1 year ago
0
Fix imports on protein_protein_interface
#260
pgbarletta
closed
1 year ago
1
web server API to backend
#259
timkucera
opened
1 year ago
0
operations on datasets
#258
cgoliver
opened
1 year ago
0
db: https://intenzydb.accre.vanderbilt.edu/
#257
timkucera
opened
1 year ago
0
docs: search broken
#256
timkucera
opened
1 year ago
0
QC
#255
timkucera
opened
1 year ago
0
Pfam labels
#254
timkucera
opened
1 year ago
1
PDB substructure selection
#253
cgoliver
opened
1 year ago
0
.citation(format) method as part of the dataset
#252
timkucera
opened
1 year ago
1
checkpoint conversions
#251
timkucera
opened
1 year ago
0
Docs2
#250
timkucera
closed
1 year ago
0
Docstrings
#249
cgoliver
closed
1 year ago
0
Docs
#248
timkucera
closed
1 year ago
0
automatically generate a leaderboard entry
#247
timkucera
opened
1 year ago
1
set up organization
#246
timkucera
opened
1 year ago
0
add FLOPs and parameter metrics to task
#245
timkucera
opened
1 year ago
0
records downloads of datasets
#244
timkucera
opened
1 year ago
0
include frameworks in the docs
#243
cgoliver
closed
1 year ago
0
sort all globs
#242
timkucera
opened
1 year ago
0
Check edge_attribute in pyg()
#241
cgoliver
opened
1 year ago
0
domain
#240
timkucera
closed
1 year ago
0
Website mobile-friendly
#239
timkucera
opened
1 year ago
0
Check DUDE
#238
timkucera
opened
1 year ago
0
Dataset and Task documentation
#237
timkucera
opened
1 year ago
0
ProteinShake DataLoader?
#236
timkucera
opened
1 year ago
0
Task re-design
#235
timkucera
opened
1 year ago
1
improve warnings
#234
timkucera
opened
1 year ago
0
get ID from pdb header instead of filename?
#233
timkucera
opened
1 year ago
0
add back tutorials to docs
#232
timkucera
opened
1 year ago
0
add label distributions to docs
#231
timkucera
closed
1 year ago
0
double check all tasks
#230
timkucera
opened
1 year ago
0
tests: mock download_url in test_preprocess instead of other methods
#229
timkucera
opened
1 year ago
0
frameworks in docs
#228
timkucera
closed
1 year ago
1
sharded avros
#227
timkucera
opened
1 year ago
0
cleanup code and docstrings
#226
timkucera
opened
1 year ago
0
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