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BorgwardtLab
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proteinshake
Protein structure datasets for machine learning.
https://proteinshake.ai
BSD 3-Clause "New" or "Revised" License
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ditch AF organisms
#225
timkucera
opened
1 year ago
0
Submission
#224
timkucera
closed
1 year ago
2
rewrite task class
#223
timkucera
opened
1 year ago
0
switch to `use_precomputed=False` if dataset not available
#222
timkucera
closed
1 year ago
0
switch completely to UniProt
#221
timkucera
opened
1 year ago
0
add secondary structure as a feature to residues/atoms
#220
timkucera
opened
1 year ago
0
migrate leaderboard to paperswithcode
#219
timkucera
opened
1 year ago
1
modularized filtering pipeline
#218
timkucera
closed
1 year ago
0
quality scores and filtering
#217
timkucera
opened
1 year ago
0
option to skip signature check
#216
timkucera
closed
1 year ago
0
pass tokenizers as arguments to representation converters
#215
timkucera
opened
1 year ago
0
optimize avro file format
#214
timkucera
opened
1 year ago
0
Update README.md
#213
timkucera
closed
1 year ago
0
generative tasks
#212
timkucera
opened
1 year ago
0
PPI Task upgrade
#211
cgoliver
closed
1 year ago
0
make some dependencies optional in the pip install
#210
timkucera
opened
1 year ago
1
add cafa as task?
#209
cgoliver
opened
1 year ago
0
do pre-processing of ppi task
#208
cgoliver
closed
1 year ago
0
tutorial on datasets from scratch
#207
cgoliver
closed
1 year ago
0
docstring internal functions
#206
cgoliver
opened
1 year ago
0
Taskfixes
#205
cgoliver
closed
1 year ago
1
verbosity
#204
timkucera
closed
1 year ago
0
longer
#203
cgoliver
closed
1 year ago
0
Fixes
#202
cgoliver
closed
1 year ago
0
add tutorials for all datasets and tasks
#201
timkucera
opened
1 year ago
1
rework documentation
#200
timkucera
closed
1 year ago
0
fix pypi readme
#199
timkucera
closed
1 year ago
1
add citation information
#198
timkucera
closed
1 year ago
0
fix compatibility issues with pytorch2.0 and pyg
#197
claying
closed
1 year ago
0
Anim
#196
cgoliver
closed
1 year ago
0
speed up testing
#195
timkucera
opened
1 year ago
0
slow task loading
#194
timkucera
opened
1 year ago
0
Process test
#193
cgoliver
closed
1 year ago
1
test task evals
#192
cgoliver
closed
1 year ago
1
GO evaluate divide by zero
#191
cgoliver
closed
1 year ago
0
Docfix
#190
cgoliver
closed
1 year ago
0
ligand id from pdbbind has extra formatting
#189
cgoliver
opened
1 year ago
0
multi-threaded download for large files
#188
timkucera
opened
1 year ago
0
Create LICENSE
#187
timkucera
closed
1 year ago
0
.to_sequence()
#186
timkucera
opened
1 year ago
0
Re-design data pipeline
#185
timkucera
opened
1 year ago
0
Pfamtask
#184
cgoliver
closed
1 year ago
1
Dude
#183
cgoliver
closed
1 year ago
2
pool AF and RCSB raw PDB files
#182
timkucera
opened
1 year ago
0
to_point() error
#181
cgoliver
closed
1 year ago
3
GeneOntologyDataset error
#180
cgoliver
closed
1 year ago
1
ppi task chain splitting
#179
cgoliver
closed
1 year ago
0
Docs
#178
cgoliver
closed
1 year ago
0
Dev
#177
timkucera
closed
1 year ago
0
handle chains
#176
timkucera
closed
1 year ago
0
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