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Following `inference.py` code, I come to doubt if there exist code for structure diffusion.
Is this intended or I'm just missing something?
Any advice would help a lot!
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Hi! I am trying to generate molecules based on MTOR and MEK1 as written in the Github repo, but I am missing the `ligand_smiles.txt` for both protein, as stated in the `scoring_definition.csv`. Are bo…
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We added a nmdc schema Class for the gene aggregation for the sequencing workflows, see https://microbiomedata.github.io/nmdc-schema/FunctionalAnnotationAggMember/, but not for the metaproteomics. I b…
aclum updated
3 weeks ago
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https://arxiv.org/abs/1708.04692
> In this paper, we propose a novel application of Generative Adversarial Networks (GAN) to the synthesis of cells imaged by fluorescence microscopy. Compared to na…
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I performed covalent docking using meeko and autodock, When I received the results the dlg file seems to be missing some atoms. I’m not able to create a file for md simulation because it shows incorre…
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## *Repository Creation Request for Bioinformatics and Computational Biology*
1. #### Coordinating Institute: Amrita Vishwa Vidyapeetham
2. #### Approver’s Name: Dr. Shyam Diwakar
3. #### …
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Hi
How is it possible to generate a structure database from my own protein structures in order to search with new proteins? I tried to generate new descriptors but it seems this is just for a prot…
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> I would love to be able to specify residues to design. Or full regions. If I have a structure, and I want to be able to (re)design a loop.
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Hello, may I ask if it's possible to ensure the interaction of certain key amino acid residues during the docking process?
In fact, we need to dock a series of analogs to further determine which c…
TVect updated
7 months ago
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I have tried to us the tdb webserver for one protein, which is 258 amino acids long, The result is at
http://bioinf.cs.ucl.ac.uk/bio_serf/getresultattached/158534327
which is 9 residues long.
Also,…