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I am having issues as I can't run Docker on my laptop and our big processing machine is running Windows Server (it's a VM) which won't run Docker without $$$. Is there a way to get into Nextflow or so…
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The current IPAW pipeline utilises hg19 genome based databases, and the reported coordinates of novel peptides and SAAV peptides are hg19 genomic coordinates. The goal is to make IPAW compatible for l…
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Hi, I am running in steps according to the main.nf file. When I run make_pacbio_cds_gtf.py, I get an empty result. And I found a difference between make_pacbio_cds_gtf.py's code in main.nf and modules…
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**Preferred term label**
lipid-associated macrophage
**Synonyms** (add reference(s), please)
LAM
**Definition** (free text, with reference(s), please. PubMed ID format is PMID:XXXXXX)
Macroph…
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Hi @daichengxin:
This dataset (issues #1 ) has one fraction missing RAW file breaking the quantms pipeline. In the current version of quantms this can't be run.
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@yafeng , @glormph and @husensofteng I am getting the following error. I have followed the instruction on your README and when I run the job it fails. I am working on the with the LFQ raw files.
E…
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I am afraid to contact you at such short notice.
I am interested in the pipeline that you kindly published, and I am running it using label free data, but I am having trouble resolving some of the …
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Look through existing tasks for cases that should match: https://tracker.data.humancellatlas.org/tasks?filter=%5B%7B%22categoryKey%22%3A%22description%22%2C%22value%22%3A%5B%22Update+project+title+to+…
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External workflows, e.g. the once from the training material, should be updated regularly. Or even better should be a linked against the training material. Maybe we can pull them down before running t…
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### Description of the bug
```
tail -n 500 -f /hps/nobackup/juan/pride/reanalysis/proteogenomics/PXD010154/work/b6/6e37bc1f0f149a2785a8bd4d3968ab/out_17_sage.log
Found Sage version string: Version…