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How to use Agilent .d folder formats in PbfGen?I have installed ProteoWizard, and I tried to use msconvertGUI to convert the .d folder formats into .mzML files so that I can use it in PbfGen. However…
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Hello,
I have a quick question regarding the linux based version of DIANN. I am wondering if there is any plan to make it support .raw files in near future.
If not, what is the best practice to …
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MZMLb is an implementation of MZML using HDF5 to store binary information it is faster and smaller than traditional MZML (https://pubs.acs.org/doi/10.1021/acs.jproteome.0c00192). We should add support…
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Using the following command:
```shell
docker run --platform linux/amd64 -v $(pwd):/data:rw chambm/pwiz-skyline-i-agree-to-the-vendor-licenses:latest wine msconvert ./sample_file.d --64 --zlib --mz…
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With the new release for the ThermoRawFileParser planned [here](https://github.com/compomics/ThermoRawFileParser/issues/112), the current implementation of mzR won't be able to read the new mzml files…
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Hi,
I have pulled the image
`docker pull chambm/pwiz-skyline-i-agree-to-the-vendor-licenses`
and I basically run it like this
`docker run -it --rm -e WINEDEBUG=-all -v /your/data:/data chambm/pw…
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Hello,
I was wondering if there is a way to extract metadata in a more direct way or extract more details info.
As a test I added the following to a file:
```
…
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I am wondering on how to analyze the mzid output from the MS-GF+ for protein quantifications. Which software of tools can be used to quantify proteins identified by this pipeline? I am stuck and I am …
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Steps to reproduce:
1) create blank document in molecule mode
2) View -> spectral libraries. Dropdown -> Add, choose a name, add the MSP file from this gist:
https://gist.github.com/meowcat/4f0a0…