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It appears that the image is resampled to 3x3x3 prior to the extraction of the radiomics features:
https://github.com/wasserth/TotalSegmentator/blob/master/totalsegmentator/statistics.py#L29
I d…
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Hi, I was wondering if pyradiomics allows to create image map based on specific texture features. For example entropy, GLCM.
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When I tried to extract features on many images in a loop using PyRadiomics I ran into a memory error. I was able to reproduce two types of memory errors with a simple script and just one image and ma…
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Hello,
I am trying to run Pyradiomics using the batch mode in the command line. I have typed in the following:
pyradiomics
I am getting the following error:
E: radiomics.script: Required c…
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When conducting feature extraction using Pyradiomics, I encountered this error:
```
Exception thrown in SimpleITK Cast: /tmp/SimpleITK/Code/BasicFilters/src/sitkCastImageFilter.cxx:94:
sitk::ERR…
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In FAQs/"What modalities does PyRadiomics support?", 2D-feature extraction was explained as follows:
3D or slice: Although PyRadiomics supports single slice (2D) feature extraction, the input is stil…
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I am trying to extract the GLRLM features for a set of images, and then storing them to be used as input for further SVM classification. However, I am faced with the issue that, the features calculate…
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Thank you very much for this wonderful repository. I have installed pyradiomics using docker. When I use it to extract radiomic features, I met the 'Image/Mask geometry mismatch' error.
code:
`sudo …
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Hi, I noticed that when executing the feature extractor, there is a parameter "voxelBased" to select whether to use voxel-based or segment-based feature extraction.
Could you please help me clarify…
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I‘m new in radiomics and I just encountered this value error:
ValueError: ('Label (%g) not present in mask. Choose from %s', 1, array([2], dtype=uint32))
How can I fix the problem?