-
Hi @cflerin !
I have few questions regarding "direct target identification"
I was wondering if you could specify in what step this happens?
I followed this tutorial : https://github.com/aertsl…
-
Hi,
First of all, thank you for this wonderful tool.
I’m wondering why every element in the result matrix of running Prune() is zero. I show you the code i ran.
data(motifAnnotations_hgnc)
motif…
-
Hi,
I am new to SCENIC and I was wondering if it was possible to compare the regulons outputs of two different SCENIC outputs. Due to the nature of my study it does not make sense to have them as o…
-
**Describe the bug**
I am running the grn part of the pyscenic through docker as exactly shared here ("https://pyscenic.readthedocs.io/en/latest/installation.html#command-line-interface"). The code …
-
hello,
**Describe the bug**
My shell:
```
pyscenic aucell \
scenic.loom \
reg.csv \
--output pyscenic_output.loom \
--num_workers 5
```
My log
```
2024-06-13 13:14:58,9…
-
**Hello Scenic developers,
I wanted to express my gratitude for creating such an amazing tool. I've used SCENIC to analyze single-cell data that we're interested in incorporating into our Nextflow …
-
I got an error when run runSCENIC_3_scoreCells()
0:47 Step 3. Analyzing the network activity in each individual cell
Number of regulons to evaluate on cells: 233
Biggest (non-extended) regulons:…
-
Hi. I run the pySCENIC CLI and get 3 csv files.
`expr_mat.adjacencies.tsv` from Step 1 `grn`
`regulons.csv` from Step 2 `ctx`
`auc_mtx.csv` from Step 3 `aucell`
After inspecting the regulon…
-
Hi everyone,
I am trying to plot regulon activity using the code provided in the vignette. When I try to run
`regulonActivity_byCellType
-
Hi, Thank you for developing this great tool. And I need a little instruction in maybe the final step , after nearly a month of struggling, I finally got the output file through run these command lin…