-
I think that there is an issue with the directory path! I m getting the following error with make: "/home/user/Downloads/gtfold/gtfold-mfe/include/AdvancedDouble.h:25:10: fatal error: gmp.h: No such f…
-
Dear @AntonPetrov et al,
I am trying to use R2DT to visualize secondary structures of non-coding internal transcribed spacer 2 (ITS2) sequences in a standard layout for evolutionary/phylogenetic an…
-
Hello,
Executed code:
shapemapper --name example --target ../FASTA/RNA.fasta --out RNA_shapemap --amplicon --modified --R1 100mM_1M7_RNA_R1.fastq --R2 100mM_1M7_RNA_R2.fastq --untreated --R1 DM…
-
Hello Jens,
I tried to use gemoma to annotate the genome and
the input format for gff file is the same as the test data so I don't understand why it didn't work out
java -jar GeMoMa-1.9…
-
Hi, first of all, thank you very much for publishing this code!
I have a question about the fine tuned secondary structure prediction.
The predict_ss_rna.py script demonstrates how to use the fine t…
-
I really love this tool and the output it gives, even for users like me.
From the RBP researcher point of view I have small suggestions:
- A normalization of overlaps like it is done in homer ( …
-
I've attempted to reproduce some of the results from the paper:
*L. Fu, Y. Cao, J. Wu, Q. Peng, Q. Nie, and X. Xie, "UFold: fast and accurate RNA secondary structure prediction with deep learning",…
-
This should be possible with the r2dt-web web component :
- https://github.com/RNAcentral/r2dt
- https://github.com/RNAcentral/r2dt-web
- https://r2dt.readthedocs.io/en/latest/widget.html
-
[GROMACS tutorial](http://www.mdtutorials.com/gmx/complex/01_pdb2gmx.html )
[GROMACS in the Cloud: A Global Supercomputer to Speed Up Alchemical Drug Design](https://doi.org/10.1021/acs.jcim.2c0004…
-
### Contact Details
mathias.charconnet@live.fr
### What happened?
Hi,
I have been using viennaRNA using sourcecode and python, and there are several interesting options that I could use with th…