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Weeks-UNC
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shapemapper2
Public repository for ShapeMapper 2 releases
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Component "Interleaver" (sample:Modified) failed
#55
Li-Li-RNA
opened
1 week ago
1
Shapemapper2_dmsmode_fastq_format_error
#54
gunjangunjan22
closed
2 weeks ago
2
How to extract reads with specific base mutations?
#53
GDemon486
closed
2 weeks ago
5
Histogram PDFs do not accurately represent mutation rate statistics if a target sequence longer than the amplicon is provided
#52
jwaldern
opened
2 months ago
1
nanoSHAPE
#51
legbar
opened
3 months ago
0
ERROR: Component "BowtieIndexBuilder" failed
#50
yinglin1202
opened
5 months ago
0
High percentage of unpaired reads in alignment
#49
Shashankti
closed
8 months ago
4
maximum recursion depth exceeded while calling a Python object
#48
doudou0908
opened
9 months ago
0
Output reactivity for entire transcriptome
#47
reislab
opened
10 months ago
4
Fastq format bugfix
#46
Psirving
opened
11 months ago
0
Access to 2.2 update
#45
catherine-douds
closed
10 months ago
1
V22 release
#44
anthonymustoe
closed
1 year ago
1
Reactivity profile calculation for two samples (Modified & Untreated)
#43
Valentine022
closed
1 year ago
1
QC reliability
#42
AMA-cs
closed
10 months ago
5
masking the primers in shape reactivity profile
#41
gunjangunjan22
opened
1 year ago
4
Shapemapper2 installation issue on oracle linux
#40
GunjanVasudeva22
opened
1 year ago
1
Low alignment percentage
#39
herber4
opened
1 year ago
1
Raw fastq files processing
#38
angelika888
closed
1 year ago
9
problem with sequence corrector
#37
irinatu
closed
10 months ago
2
workflow runs very slow
#36
AMA-cs
closed
10 months ago
5
'RuntimeError: Error: input data lengths do not all match.' in the CalcProfile step
#35
eumhh
closed
10 months ago
5
Profile figure is not created for long sequence with no error.
#34
Psirving
opened
1 year ago
0
mutation_counter formatting
#33
catherine-douds
closed
1 year ago
1
mate pairs not detected as paired.
#32
yoonsquared
closed
1 year ago
7
not understandable Error message about primers
#31
irinatu
closed
2 years ago
4
Mapped reads from amplicon wokflow - Error
#30
angelika888
closed
2 years ago
20
ShapeMapper run failed while MutationCounter_modified
#29
amkilar
closed
1 year ago
4
Sequence corrector error
#28
jodyphelan
closed
2 years ago
2
ShapeMapper using PACBIO
#27
dksenthil
closed
2 years ago
1
Component "Tab6Interleaver" (sample:Modified) failed
#26
SooLee
opened
2 years ago
1
FileNotFoundError: [Errno 2] No such file or directory
#25
rotruebchen
closed
2 years ago
1
Mutation_parser
#23
yx04
closed
2 years ago
3
Nextera prep + random primer
#22
samcho
closed
10 months ago
7
an advice please
#21
tanasa
closed
3 years ago
4
OS/pipeline troubles
#20
benoahb
opened
3 years ago
2
Should the target sequence always be transcriptome sequence?
#19
uaauaguga
closed
3 years ago
2
bbmap 38.x version :: error
#18
EricDeveaud
opened
3 years ago
0
DeprecationWarning: 'U' mode is deprecated
#17
EricDeveaud
opened
3 years ago
0
superfold software
#16
eoziolor
closed
4 years ago
2
ShapeMapper2 stops calculations
#15
angelika888
closed
3 years ago
4
Error: must provide at least one target sequence
#14
s-t-calus
opened
4 years ago
15
Read issue with SRA data from GEO Accession GSM3994935
#13
afafbioinfo
closed
4 years ago
4
BrokenPipeError
#12
wcantara
opened
4 years ago
4
memory error
#11
xfliu1995
opened
4 years ago
4
SRA download - fastq format isse
#10
SawyerHicks
opened
4 years ago
0
expose aligner effort options
#9
shapemapper
closed
4 years ago
1
--separate-ambig-counts passed to wrong executable
#8
shapemapper
closed
4 years ago
1
SuperFold
#7
xfliu1995
closed
4 years ago
3
Unhelpful error message when R1 fastq missing
#6
shapemapper
closed
4 years ago
1
add link to shapemapper-txome
#5
shapemapper
closed
4 years ago
1
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