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Hi Sam, its me again here.
Tried running the program again with TCGA samples, but unfortunately immediately ran into this new error.
When running the preprocessing, I realise that the tag direc…
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Hello!
Is it possible to use SATC with RNA-seq data?
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Hello,
Question about 'RNA sequencing assay' (OBI:0001177) and 'RNA-seq assay' (OBI:0001271). In OBI, 'RNA-seq assay' is a subclass of 'RNA sequencing assay'. Are there examples of assays that fal…
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Hi,
Thanks for this great tool. The **CIRCexplorer2 align** only supports single-end read data. The documentation mentioned **It is recommended to convert paired-end RNA-seq to single-read RNA-seq be…
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**Aim**
To generate Manhattan plot with plotGrandLinear function
**Script**
library(GenomicRanges)
library(ggbio)
library(readr)
library(tidyr)
library(dplyr)
input_dir = "/mnt/d/NGS/r…
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Compare transcriptomes of B-ALL cells from our RNA-seq to the transcriptomes from the paper:
`Single-cell functional genomics reveals determinants of sensitivity and resistance to natural killer cells…
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Hello.
I want to use EquiPNAS to check my TF bing sites (picked up from RNA seq experiment).
After creating the environment with conda, I downloaded the published models and tested the operation.…
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## Quick brainstorm of RNA-Seq research plans.
| Samples |
| --- |
| 001_002_RNA_Blood_Scripps-10-1_02-02-15 |
| 001_002_RNA_Blood_Scripps-1_09-25-14 |
| 001_002_RNA_Blood_Scripps-5_10-29-14 |
| 001_…
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Hi!
I'm not very familar with GRN, I got some questions after reading GENIE3 vignette.
1. Is that sample number matters? What's a proper sample number?
2. Is the treat method of sample matters?…
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### Description of feature
A genome note provides meta data related to the specimen used to produce the genome assembly, the specimen used to generate HiC data and the specimen used to produce RNA-Se…