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YangLab
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CIRCexplorer2
circular RNA analysis toolset
http://circexplorer2.readthedocs.org/
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Update pybedtools requirement.
#76
nadzhou
closed
2 months ago
2
interpret circRNA coordinate
#75
frankligy
opened
10 months ago
0
Reads per gene vs annotation file generated with CIRCexplorer2
#74
andre-gabriel-42
opened
1 year ago
0
Annotation with 0 fusions junctions (STAR alignment)
#73
andre-gabriel-42
opened
1 year ago
1
Annotation step with STAR data
#72
andre-gabriel-42
opened
1 year ago
0
circularRNA_known isoform and exons / outputs information
#71
npont
opened
1 year ago
0
IndexError: list index out of range.
#70
jaberdehghani64
opened
1 year ago
2
Convert paired-end RNA-seq to single-read RNA-seq?
#69
junjunlab
opened
1 year ago
3
Find circular RNA Fusion from Output of Annotate command
#68
manjumoorthy95
opened
1 year ago
0
Mitochondrial circRNAs with CIRCexploere2
#67
BirongZhang
opened
1 year ago
1
why the CIRCexplorer2 is so slow
#66
z-bluesky
opened
1 year ago
4
KeyError: '--cuff'
#65
shelkmike
opened
1 year ago
3
Is CIRCexplorer2 allowing for STAR-generated bam file as input?
#64
lovebaboon1989
opened
1 year ago
1
want to use circexplorere2 for rat genome (Rnor_6.0)
#63
sharmi85
opened
2 years ago
1
What is hg19_ref_all.txt file?
#62
mathavanpu
closed
8 months ago
3
CIRCexplorer2 parse
#61
muhammadharoon786
opened
2 years ago
0
Error in TopHat-Fusion
#60
smarhon
closed
2 years ago
1
back_spliced_junctions.bed
#59
ericbrzoska
opened
2 years ago
0
IndexError: list index out of range + CIRCexplorer2 parse
#58
BirongZhang
closed
3 years ago
2
CIRCpedia download
#57
mumichae
closed
3 years ago
1
skip comment lines of STAR chimeric output file
#56
gudeqing
closed
2 years ago
1
Annoted 0 fusion junction
#55
JerryZhang-1222
closed
3 years ago
2
parse
#54
tanasa
closed
2 years ago
2
refFlat file for solanum lycopersicum in the annotating step
#53
anuiranjan006
opened
3 years ago
1
CIRCexplorer2 parse Converted 0 fusion reads!
#52
JianGuoZhou3
opened
3 years ago
0
ValueError: too many values to unpack
#51
kopardev
closed
3 years ago
1
Export backspliced junctions as separate bam file.
#50
kopardev
opened
3 years ago
0
Python issues with parser and fetch_ucsc
#49
ryandikdan
closed
4 years ago
1
ValueError while running align
#48
KasperThystrup
closed
4 years ago
2
circRNA with only one base
#47
gudeqing
closed
4 years ago
3
Fail to annotate MapSplice junctions
#46
BarryDigby
closed
4 years ago
3
Does CIRCexplorer2 pipeline only works with mouse and human??
#45
sambhav2mishra
closed
4 years ago
2
IndexError: list index out of range
#44
JianGuoZhou3
closed
4 years ago
5
fetch_ucsc hg38 kg
#43
BarryDigby
closed
4 years ago
3
Unmapped BAM to single FASTQ (paired-end)
#42
anthfm
closed
4 years ago
0
assemble module of CIRCexplorer2 keeps on running for around a week, is it a sign of error?
#41
sambhav2mishra
closed
4 years ago
1
Invalid literal for int() with base 10: 'MIR6859-1
#40
CuypersBart
closed
4 years ago
2
ValueError: need more than 2 values to unpack
#39
lliaokc
closed
4 years ago
1
Is it possible to do circexplorer2 denovo using other aligners??
#38
sambhav2mishra
closed
5 years ago
3
Not able to download mm10_ens.txt
#37
sambhav2mishra
closed
5 years ago
1
Fix bug in ciRNA annotating
#36
kepbod
closed
5 years ago
1
Error: cannot convert GenePred to GTF!
#35
sambhav2mishra
closed
5 years ago
2
AttributeError: 'NoneType' object has no attribute 'group'
#34
sambhav2mishra
closed
5 years ago
1
circularRNA_full.txt - confusing exonCount/exonSize/exonOffsets
#33
smahaffey
closed
5 years ago
2
Issue with mm10_ens
#32
yzh37545
closed
5 years ago
2
Align unmapped reads from tophat2
#31
nedoluzhko
closed
5 years ago
0
Parsing error
#30
smahaffey
closed
5 years ago
4
Command for paired end data
#29
archu87
closed
5 years ago
4
Issue with fetch_uscs.py: TypeError
#28
Scathacheng
closed
5 years ago
5
Analysis of Mitochondria
#27
andremrsantos
closed
5 years ago
2
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