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For paired-ended RNA-seq, even it's much less than 200bp, do I still need to using the long-rna-seq-pipeline instead of the small-rna-seq-pipeline? Thanks.
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# OGS remapping
- [ ] request whole-genome alignment
- [ ] Set up data directories and get data
- [ ] run remap-gff3
# Change old content
- [ ] back up and deprecate old Apollo2
- [ ] back …
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# OGS remapping and manual annotations
- [ ] request whole-genome alignment
- [ ] Set up data directories and get data
- [ ] run remap-gff3
# Change old content
- [ ] back up and deprecate ol…
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Hello,
I'm getting an error when trying to run croo after a successful run of the encode rna-seq-pipeline. My version of croo is 0.6.0
The command I ran is
`croo /storage/aadams/scripts/encode…
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It's currently not possible to import an experiment where there are multiple bioassays for the same biomaterial.
The simplest example of this scenario is a dataset with technical replicates where a g…
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Here's a few things that could be shared across our RNA-Seq pipelines:
- fetching FASTQ data from GEO/SRA and ArrayExpress
- building STAR index and various references
- alignment
- quality …
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hello!I`m geluanfeng.I have some problems.I have these software installed, but I am getting errors when running them.
“
gelf2022@qmaster:/public252/gelf2022/datas/Zea_mays/Iso-Seq/BGI-Full-Length-RN…
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# Change old content
- [ ] back up and deprecate old Apollo2
- [ ] back up and deprecate old fasta files in BLAST
- [ ] back up and deprecate old fasta files in Hmmer
# Add new content to i5k …
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Importing data that has missing probes in a platform is currently producing a warning that is too easily dismissed.
Missing probes are indicative of a problem with the platform.
This issue shoul…
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To expand the MC2 data model, data type-specific metadata models should be assembled and reviewed by the community via the Request for Comments process. One strategy for implementing is as follows:
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