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For new term requests, please provide the following information:
## Preferred term label
PIPseq
Asteria scRNA-seq
HIVE CLX
## Textual definition
PIPseq: The Fluent BioSciences PIPseq…
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**Priority**: high
I previously created maps of the freeform cell type annotations provided by the original scRNA-seq dataset authors onto standardised, ontology-aligned Cell Ontology IDs and names…
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Are raw counts available for the scRNA-seq data? From the commands history in the Seurat object, seems like the data in the "RNA" slot under assays is normalized.
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xclone.pp.xclonedata currently only supports hg38 and hg19. Can you please also support mm10 for the RDR analysis of mouse scRNA-seq
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This is a question about the .table file. I understand that LIGER integrates the scATAC and scRNA-seq. What exactly does this .table contain, and how can I generate it from other pipelines (Seruat, sc…
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Hello, I'm very interested in using TRIBAL on a 10x scRNA-seq dataset, but I'm a bit confused of how to prepare for the input files and get started. Could you please share some details of the methods …
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Hello,
I am relatively new in variant calling using scRNA-Seq. I have 17 datasets from 17 patients. I want to call the variants for each patient. I only need the list of variants in each sample.
Can…
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Hi team,
In the Redeconve manual.ipynb, I noticed that you mentioned Redeconve can also be used for bulk RNA-seq deconvolution. Does this mean we can use scRNA as reference to deconvolute bulk RNA …
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Hi,
I looked at all examples you have and I am wondering if you can add can add one example for scRNA-seq with the image.
https://vitessce.github.io/vitessce-r/articles/ome_tiff_remote.html
all t…
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Hi,
I am going to use SCATS to analyze 10x scRNA-seq data. After running cellranger, I can only get one bam file containing many cells. How can I generate metafile for SCATS step2? Can you give an ex…