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Is there a way to extract the names of the random effects (e.g. right now, they just return Sigma_G, and if you have multiple random effects, you don't know which one is which)?
_Origi…
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Unfortunately, this is another one that is hard to offer an MWE for due to the model complexity, but I've found that get_index is producing NAs for the index and its SD when the prediction grid/predic…
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When the mesh is created with a sufficiently small number of knots/large cutoff so the mesh is coarse, `sdmTMB_simulate` will stop generating a spatial field as part of the data generation process; pl…
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My spatial unit is US counties, and I would like to include population of the county as an offset in my NB model. Is there a way to do that with your package? I did not see it mentioned in the docum…
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Hi! I love this package and I use it all the time. It's my go-to for visualizing and diagnosing GAMs on the fly.
My only critique is that I can't use it with other packages that I also use frequen…
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### Is your feature request related to a problem? Please describe.
Developer workflows involve manually installing and testing FIMS. Inconsistent workflows may lead to missing steps or errors, e.g.…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Current Behavior
When exploring using AR1 sdmTMB printed the suggestion of adding the missing data year (extra…
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I recently discovered unexpected behavior of `glmmTMB:::predict.glmmTMB()` when obtaining population-level predictions (i.e., setting random effects = 0) when the model was fitted `REML = TRUE` and an…
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Will have to be outside the usual testthat folder (for now in a folder in `inst`?) or skipped in all but local runs, which might be ideal assuming it doesn't upset CRAN to have packages loaded in non-…
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Integrate work @maxlindmark and @federico-maioli sent me (thanks!), which includes R2 for other families:
https://gist.github.com/seananderson/96c36fae8d23879e388aa7ab9a601f60
*Edit: don't use the…