pbs-assess sdmTMB issues

pbs-assess / sdmTMB

:earth_americas: An R package for spatial and spatiotemporal GLMMs with TMB

https://pbs-assess.github.io/sdmTMB/

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issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

tidy with exponentiate = TRUE returns CIs based on already exponentiated estimate

#353 maxlindmark closed 2 weeks ago
1
Fix coef() to work with delta models

#351 ericward-noaa opened 3 weeks ago
0
Predictions for `truncated_nbinom2` models

#350 tom-peatman closed 2 weeks ago
10
Add effective area occupied calculations in .cpp

#348 seananderson closed 2 weeks ago
1
Allow the 'area' argument to take a column name

#347 seananderson opened 1 month ago
0
Add cli progress bars where appropriate

#346 seananderson opened 1 month ago
0
Drop the 'proj' section of the .cpp template

#345 seananderson opened 1 month ago
0
Update README.Rmd

#344 francisvolh closed 1 month ago
2
Release sdmTMB 0.6.0

#343 seananderson closed 1 month ago
0
Predictions with new data from delta models with random intercepts

#342 tom-peatman closed 1 month ago
3
fix delta-gamma binomial link for type = 'poisson-link'

#340 jdunic closed 1 month ago
0
Expanding abundance when fitting Bernoulli-cloglog model

#339 James-Thorson-NOAA opened 2 months ago
2
get_index() over alternate time variable?

#338 seanhardison1 closed 2 months ago
3
Add names of random effects in tidy()

#337 seananderson opened 2 months ago
1
Simplify extra time implementation

#336 seananderson closed 2 months ago
0
Fix prediction with newdata = NULL for non-delta models with extra_time

#335 seananderson closed 2 months ago
0
get_index potential computation issues for very large prediction grids

#334 Lewis-Barnett-NOAA opened 3 months ago
7
Add gengamma rqr

#333 jdunic closed 2 months ago
0
Simplify extra time implementation

#329 seananderson closed 2 months ago
0
`mvn-laplace` residual estimation fails due to `predict.sdmTMB()` offset issue

#326 sebpardo closed 3 months ago
0
Release sdmTMB 0.5.0

#325 seananderson closed 3 months ago
1
Abs (gradients)

#324 ericward-noaa closed 3 months ago
1
Make get_index() smarter about extra time slices and area argument

#323 seananderson closed 3 months ago
2
Add RMSE and MAE sdmTMB_cv examples to cross validation vignette

#322 seanhardison1 opened 3 months ago
3
loosen residual test tolerance slightly

#321 bbolker closed 3 months ago
1
Rename time column internally to protect against extra_time + as.factor conflict

#320 Lewis-Barnett-NOAA closed 3 months ago
2
Add tidy to sdmTMB_cv

#319 ericward-noaa opened 3 months ago
0
Add argument to _mix() families for fixed proportion?

#318 seananderson opened 4 months ago
1
Update Bayesian vignette to note Jacobian adjustments and how to enable those

#316 seananderson opened 4 months ago
0
Adding `getsd = TRUE` to `sdmTMBcontrol`

#311 James-Thorson-NOAA closed 4 months ago
2
hardcode log-log link in clean name for type= "poisson-link"

#309 Lewis-Barnett-NOAA closed 3 months ago
1
poisson-link does not confer correct combination of link functions

#308 Lewis-Barnett-NOAA closed 4 months ago
1
Release sdmTMB 0.4.3

#303 seananderson closed 4 months ago
6
Computational scaling with large datasets, especially for Tweedie

#302 seananderson closed 3 months ago
0
Add new message about time

#299 ericward-noaa closed 4 months ago
0
MCMC samples don't work with `extra_time`

#297 ericward-noaa closed 5 months ago
1
Add `verbose` to check.R

#296 ericward-noaa closed 5 months ago
0
text edits to standardize reference formats

#295 Lewis-Barnett-NOAA closed 5 months ago
0
Implementing standard curve models for eDNA applications

#292 ericward-noaa opened 5 months ago
0
Add `type` argument to delta families

#290 seananderson closed 3 months ago
2
Release sdmTMB 0.4.2

#289 seananderson closed 5 months ago
1
NA/NaN gradient evaluation error encountered when running sdmTMB function with spatial `on`

#288 davjfish opened 5 months ago
22
Push an update to CRAN to force binary rebuilds

#287 seananderson closed 5 months ago
1
Gengamma

#286 James-Thorson-NOAA closed 3 months ago
3
Add check in predict() that spatial coordinates are within the fitted coordinates

#285 seananderson closed 3 months ago
0
Check for factor random intercept columns in newdata and add tests, fixes #278

#280 sebpardo closed 7 months ago
1
`predict()` for a model with spatially varying coefficients requires `newdata`

#279 ecophilina closed 7 months ago
3
`predict()` crashes R when model has a factor random intercept that is not the right class in `newdata`

#278 sebpardo closed 7 months ago
1
Adding predict_args to fit() cause an error when passed through predict.sdmTMB

#276 MikkoVihtakari closed 8 months ago
3
What should predict.sdmTMB return when offset is left NULL?

#274 seananderson opened 8 months ago
1