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**Which problem would you like to address? Please describe.**
The CellML team is about to implement support for parameter estimation in OpenCor, and originally investigated PETab as the format to use…
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Often different figures involve different simulations. However, COPASI can only handle 1 simulation at a time. As a result, these SED-ML may have plot that don't reproduce published simulation results…
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I have been looking into the possibility of using lcov's genhtml to generate a custom coverage dashboard for . This project is written in Python, so I'm experimenting with several different ways of c…
zackw updated
3 weeks ago
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https://github.com/SED-ML/sed-ml/issues/141
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Currently only simple parameter modifications are encoded in SED-ML and element deletions. Need to also include model generator parameter modifications and support for parameter sweeps.
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= Description =
- Implementation of the !OneStep class (derived from Simulation).
= Context =
- Simulation is the base-class for running model simulations; in SED-ML level 1 version 2, new Simulation…
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Right now, if you export a simulation to SED-ML (using the `Simulation Experiment` view), OpenCOR will ignore any model parameter which value has been changed by the user during the simulation. Howeve…
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@jmdetloff here's some starting points
## Goal
A UI which enables users to quickly simulate models under alternate conditions (e.g., knockout a gene, change the initiation concentration of a drug,…
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= Description =
- Integrate required words of the KiSAO ontology in the corresponding Simulation-derived classes.
= Context =
- KiSAO is an ontology of kinetic simulation algorithms; it is used for …
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Many of the SED-ML classes presume that models and simulation experiments involve float-value attributes.
- UniformTimeCourse.initialTime, UniformTimeCourse.outputStartTime, UniformTimeCourse.output…