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As has been discussed offline it would be ideal to develop an optimisation approach to allow for the cutting of cells in close proximity while preserving membrane integrity. I have created this GitHub…
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**Interop Contact**: Jack DiGiovanna
**Active in 2021**: Active,
**Researche**r: Wilson McKerrow [PDC (CRDC), GDC (CRDC), and GTEx (AnVIL) data]
## Analysis Question
The Fenyo lab is studying how re…
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# Problem
We have been instructed to accept submissions in annData files where gene expression quantifications have been generated by external groups and raw data are not available. We have no cont…
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Hello all,
Just wanted to let people know what tools I'm working on (or might work on in the future), in case anyone else is interested in these.
I'm concentrating on RNA-seq/ChIP-seq/ATAC-seq wo…
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The [iSEE](https://bioconductor.org/packages/iSEE/) Bioconductor package enables interactive exploration of any type of data that can be stored in a [SummarizedExperiment](https://bioconductor.org/pac…
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# Design
## Additions
For Assay
MUST Use
mCT-seq [EFO:0030060]
"cell" or "nucleus"
MERFISH [EFO:0008992]
"na"
…
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We need to scope tasks and capacities to integrate the baseline expression data into the Platform.
@tskir and myself will initiate discussions this week and will populate/assign this ticket according…
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Hi,
An error is returned when running the program:
ImportError: cannot import name 'gcd' from 'fractions' (/home/lukas/anaconda3/lib/python3.9/fractions.py)
As per stack overflow the problem …
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**Question: are the cells in imputed.h5ad the simulated cells?**
Sub-question 1: why are the control cells not included in the imputed.h5ad?
Sub-question 2: why is the number of variables betwee…
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Determine which ontologies to use for transcriptomics data (meta data templates)