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**Describe the bug**
```
Error executing process > 'single_sample_scrublet:SCRUBLET__DOUBLET_REMOVAL:SC__SCRUBLET__DOUBLET_DETECTION_REPORT (1)' …
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Hi!
I'm having an issue with the export_pseudobulk function, which has been previously [41](https://github.com/aertslab/pycisTopic/issues/41). The function runs but doesn't output any files and in…
SITRR updated
5 months ago
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I am running snakemake from a conda environment from a screen on an LSF cluster. 'pip freeze' tells me I'm running snakemake==5.6.0 (python 3.6.8), and I've seen the same behaviour with snakemake==5.4…
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error in CreateSeuratObject. when I update packages Matrix(1.6-5), the error still exists. In addition, I change the version of matrix(1.6-5,1.6-4,1.6-3) and SeuratObject(5.0.0), the same error occure…
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I can run all the processes smoothly now, but there are still some questions.
Firstly, I could obtained all the results of "Pathway_list" and "scPathways_rankPvalue". However, I could not find a fun…
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Hi there,
I recently upgraded by bcbio install (I had to use the method recommended at https://github.com/bcbio/bcbio-nextgen/issues/2676 to get around conda issues). Testing the new install, I …
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Hi,
Is the reference Seurat object available somewhere? I would like to run TCellMap.R.
refSeuratObj
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/JEFworks-Lab/SEraster
Confirm the following by ed…
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作者您好,非常令人深刻的工作,目前我在重复示例相关工作时,通过Linux系统首先通过Conda建环境,包括用conda安装GenomicRanges和IRanges,在JupyterLab下面运行示例代码:
```
system.time(
#1.start to run the wrapper functions for example.
Pagwas_data
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I have a few TFs that appear to be missing from the TF list seen in this file: hs_hgnc_tfs.txt, which is available in the resources folder. The TFs are:
ZFHX4
AEBP1
CXXC5
TSHZ2
They are also mi…