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Hi,
I receive this error while spike sorting with Kilosort on concatenated recordings:
```
---------------------------------------------------------------------------
OSError …
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I have a problem. The error information is following:
```
Traceback (most recent call last):
File "/home/NITD/lxr/code/spike_sorting/run_sorter0913.py", line 628, in
start_sorting(manual,
…
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Hi all,
i have troubles to run sorting in docker containers for Kilosort 3 but also Kilosort 2.5
If i just run the sorter with docker_image=True
```
installation_mode='auto' switching to install…
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Hi, I used kilosort4 outside of spikeinterface for preprocessing and spike sorting. I did some brief checks and curation in Phy. I now want to load the data into spikeinterface to do other visualizati…
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### Describe the issue:
KS detects only noise signals as spike clusters, with high ContamPct values in my case.
Could you take a look at my example data and suggest how to obtain better sorting resu…
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After manual curation, I'm recalculating cluster waveforms and some quality metrics using the script below. However, when I export to phy, the channel numbers are wrong. When I pause/debug the script …
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I will describe my (potentially very niche) issue as it is easier for understanding the request:
I currently have a trace with strong artefacts from optogenetic stimulation. Opto stimulation consis…
vigji updated
4 weeks ago
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Organization of data in sorted assets has changed yet again and broken our NWB packaging.
We currently only have one session that needs to be re-sorted for the paper 1 datacube, but we'll likely fi…
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In all camera related interfaces, expose control over the explicit 'revision' value used (latest might not be the current 'released' or approved ones for use)
https://github.com/catalystneuro/IBL-t…
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Hi I encountered an issue that I lost the spike train for the merged units when I extract the waveform from the sliced sorting from a concatenated sorting
I used the following line the generate a c…