SpikeInterface spikeinterface issues

SpikeInterface / spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

https://spikeinterface.readthedocs.io

MIT License

530 stars 188 forks source link

issues

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Add `stream_mode` as extra_requirements for NWB when streaming

#3548 alejoe91 opened 23 hours ago
0
drift correction pipeline for long / concatenated recordings (RE: slack post)

#3547 WeissShahaf closed 2 hours ago
9
Some improvements to time handling

#3546 JoeZiminski opened 1 day ago
0
Phy doesn't load results after Mountainsort5 sorting, problem with export_to_phy

#3545 dmkobylkov closed 21 hours ago
9
SortingAnalyzer export to phy show different waveforms than the native sorting

#3544 MarinManuel opened 2 days ago
5
spykingcircus2: optimization and speedup for in vitro HD-MEA recordings with low SNR

#3543 Djoels opened 3 days ago
2
Dredge Motion correction gets stuck on Solving

#3542 kkatlowitz opened 3 days ago
6
missing API documentation on drift correction arguments

#3541 WeissShahaf opened 4 days ago
1
Missing requirements in docker container for spike sorting with kilosort3

#3540 steevelaquitaine opened 6 days ago
3
error with OpenEphys recording with disabled probes

#3539 vigji closed 23 hours ago
1
create NumpyRecording for a single channel is not supported

#3538 borrepp closed 6 days ago
2
Unify template and quality metrics

#3537 chrishalcrow opened 1 week ago
0
Load peaks from kilosort output

#3536 JoeZiminski opened 1 week ago
0
Add verbose kwarg to mda write_recording

#3535 chrishalcrow closed 2 days ago
1
Times propagation to preprocessing and other modules

#3534 JoeZiminski opened 1 week ago
2
Clustering components api

#3533 yger opened 1 week ago
1
error with job_kwargs in ironclust

#3532 paul-aparicio opened 1 week ago
12
Extend whitening tests

#3531 JoeZiminski opened 1 week ago
9
error with spyking circus2

#3530 paul-aparicio closed 1 week ago
4
Decompress Zarr to Binary Files

#3529 atombysx closed 5 days ago
10
tridesclous run generates very large files

#3528 Djoels closed 1 day ago
5
Removing useless dependencies

#3527 yger closed 1 week ago
0
Implement engine="thread" in ChunkRecordingExecutor

#3526 samuelgarcia opened 1 week ago
8
WIP : get additional data from HerdingspikesSortingExtractor

#3525 b-grimaud opened 2 weeks ago
5
Fix cbin_file_path

#3524 alejoe91 closed 2 days ago
0
CompressedBinaryIblExtractor does not save cbin_file relative

#3523 arturoptophys closed 2 days ago
4
Ibl exporter

#3522 jonahpearl opened 2 weeks ago
6
How to eliminate potential AC noises?

#3521 DaohanZhang opened 2 weeks ago
7
Phy fails to load dataset after running export_to_phy due to misshapen amplitudes vector

#3520 nikhilchandra closed 1 week ago
10
Don't let decimate mess with times and skim tests

#3519 alejoe91 closed 2 weeks ago
2
Sc2 making use of new recording slices

#3518 yger opened 2 weeks ago
1
Fix a cross-band interpolation bug, and allow time_vector in interpolate_motion

#3517 cwindolf opened 2 weeks ago
2
Remove remaining array.ptp()s

#3516 cwindolf closed 2 weeks ago
0
Jupyter Notebook spikeInterface import issue HPC

#3515 htran1902 opened 3 weeks ago
8
Issue in loading data (from phy)

#3514 kshtjkumar closed 2 weeks ago
3
Spikeinterface gui issues and improvements

#3513 Antho2422 opened 3 weeks ago
2
Save spikeinterface -gui setup for other curations

#3512 Antho2422 opened 3 weeks ago
7
Channel assigned to unit problem after post processing

#3511 LuRodForster opened 3 weeks ago
4
Possible issue in whitening procedure?

#3510 LeMuellerGuy opened 3 weeks ago
3
Add `shift start time` function.

#3509 JoeZiminski closed 1 day ago
6
"Out of range float values are not JSON compliant" error with si.plot_sorting_summary

#3508 laurenostrowski opened 3 weeks ago
2
IBL Test Failing in Full Tests

#3507 zm711 closed 3 weeks ago
3
recording_slices in run_node_pipeline()

#3506 samuelgarcia closed 2 weeks ago
0
Whitening fix - compute covariance matrix in float

#3505 JoeZiminski closed 2 weeks ago
10
Add custom tutorials index page.

#3504 JoeZiminski closed 2 days ago
7
Instllation tips using uv

#3503 samuelgarcia opened 4 weeks ago
2
Kilosort docker image cant install spikeinterface

#3502 arturoptophys opened 4 weeks ago
10
Add error messaging around use of get data in templates

#3501 zm711 closed 2 weeks ago
1
feature request: drift correction computation on GPU

#3500 WeissShahaf closed 2 weeks ago
6
Add kilosort drift maps (that work directly on kilosort output)

#3499 JoeZiminski closed 1 week ago
5