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Hi @marcelm,
I am currently benchmarking v0.7.1 vs 0.8.0 vs commit eb7ef72 for the SNP/indel calling and get the below error
```
rule make_sorted_bam:
input: /proj/snic2022-6-31/nobackup/s…
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I’ve been trying to understand the index data structures. I’ll summarize here for reference, but will also write down a suggestion for how to perhaps reduce memory usage.
1. A vector of randstrobes…
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hi @ksahlin ,
sorry for coming back with a new possible issue!
I used the very latest patch you've made to align a full sample against the public genome we discussed later.
The output was correctly…
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hi @ksahlin ,
your approach looks really promising. I already started to work with it and do some benchmarks in respect with downstream analyses.
Would it be possible to allow StrobeAlign to direct…
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Dear StrobeAlign author,
Use default settings, the mapping sam file output cannot be transformed into sorted bam file by samtools:
(base) [jzhao399@atl1-1-02-003-9-r Competitive_mapping]$ time …
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Hi,
Sorry if I've missed this detail in the documentation but I was wondering how strobemers handles multi-fasta* files of assembled genomes? I don't want to concatenate as this would create artif…
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Hi, I'm a little confused about how to adjust the searching window for positions near the end of the sequence.
I know that these positions need to be kept for producing an equal number of strobemer…
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Hi Kristoffer,
I'm a little confused about choosing the parameters for Hybridstrobes. So as I know that:
```
Wmin >= k (kmer-size)
Wmax > Wmin
```
I'm just not sure about choosing the `Wmin` …
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Hi Kristoffer, I found an inconsistency between the source code and the manuscript.
In paper section "Implementation":
... For randstrobes, ... we select the strobe mj in a window that minimizes…