shenwei356 unikmer issues

shenwei356 / unikmer

A versatile toolkit for k-mers with taxonomic information

https://bioinf.shenwei.me/unikmer

MIT License

72 stars 7 forks source link

issues

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Can unikmer generate kmers for multiple sequence in a single fasta file separately?

#30 gaospecial opened 7 months ago
0
Gzipped output of fasta file in uniqs/map

#29 gaospecial opened 7 months ago
0
unikmer diff & uniqs: Ns

#28 sihellem opened 8 months ago
0
Find the unique sequnces

#27 sanjaysingh765 opened 1 year ago
0
Bump golang.org/x/sys from 0.0.0-20211205182925-97ca703d548d to 0.1.0

#26 dependabot[bot] closed 1 year ago
1
add doc

#25 shenwei356 closed 2 years ago
0
Refactor this package

#24 shenwei356 closed 2 years ago
0
Request for more instructions in README.md on hashes

#23 jelber2 closed 2 years ago
4
a bench

#22 shenwei356 closed 3 years ago
1
Fails to build on 32-bit architectures

#21 nileshpatra closed 3 years ago
1
TODO: support strobemer

#20 shenwei356 closed 3 years ago
2
TODO: support hashing amino acids

#19 shenwei356 closed 3 years ago
1
dependency issue with nthash

#18 cmdoret closed 3 years ago
1
Improvement command "common"

#17 ms-gx closed 3 years ago
2
Please document "locate"

#16 ms-gx closed 3 years ago
5
add flag `--circular` flag back to 'unikmer count/locate/uniqs'

#15 shenwei356 closed 3 years ago
0
support k>32 by storing hash value

#14 shenwei356 closed 3 years ago
0
use https://github.com/fuzxxl/pospop

#13 shenwei356 closed 3 years ago
0
unikmer db search: fix performance

#12 shenwei356 closed 3 years ago
0
Fixed size of matrix row, cache-friendly optimization

#11 shenwei356 closed 3 years ago
0
Index and search .unik files with COBS algorithm

#10 shenwei356 closed 3 years ago
0
Supporting optional Taxids

#9 shenwei356 closed 4 years ago
0
Get version without accessing internet?

#8 tseemann closed 4 years ago
1
Make new release?

#7 tseemann closed 4 years ago
3
unikmer uniqs: allowing discontinuous unique subsequences?

#6 shenwei356 closed 5 years ago
0
new cmd: mapping?

#5 shenwei356 closed 5 years ago
1
add minHash?

#4 shenwei356 closed 5 years ago
0
accelerate diff using inverse bloomfilter

#3 shenwei356 closed 5 years ago
0
Now in brew

#2 tseemann closed 5 years ago
1
Support for compact binary file format

#1 shenwei356 closed 5 years ago
0