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Hi,
I used the `spec2nii` command to generate sidecar files for Siemens dicom MRS data. I three types single-voxel MRS files: `_ref` (water reference file), `_ECC` (eddy current corrected), and `_noE…
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I have noticed some WSI in NSCLC dataset do not have level 2, so how did you extract patches for these images for your framework?
For example: TCGA-05-4384-01Z-00-DX1.CA68BF29-BBE3-4C8E-B48B-554431A9…
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Originally reported in the [GATK repo](https://github.com/broadinstitute/gatk/issues/6725):
Affected tool(s) or class(es)
GATK LiftoverVcf
Affected version(s)
gatk/4.1.7.0
Description
The …
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hi,when i do the code `vg autoindex --workflow giraffe -r ref.fa -v all_sample_sv3.vcf.gz -p merge`
it get the error:
```
[vg autoindex] Executing command: vg autoindex --workflow giraffe -r ref.f…
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When testing https://github.com/ome/omero-web/pull/536 on idr-testing, I noticed this issue which I think Seb mentioned was due to a Bio-Formats update (see below)
Deployed on idr-testing from bran…
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```
============================================================= test session starts ==============================================================
platform linux -- Python 3.10.14, pytest-8.1.1, p…
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grpc version: 1.52.1
java version: 1.8
Now my client uses 100 threads, each thread sends 1M data, the server directly returns the response, I set the out-of-heap memory size limit to 512M, the…
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Does SVS work in English's lyrics?
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Hello,
Thank you for this great tool, is there any approach to convert SV's file with breakpoint positions into NeoSV required VCF format?
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Hi @tjiangHIT ,
I am sorry, I encountered another problem. The attached bam file example has a clear heterozygous 97 base insertion at `1:1501010`.
![IGV_undetected](https://user-images.githubuser…