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tjiangHIT
/
cuteSV
Long read based human genomic structural variation detection with cuteSV
MIT License
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call somatic SVs
#153
DayTimeMouse
opened
1 day ago
1
[Help needed] Translocation detection excluding telomere and repeated sequence
#152
ThDef
opened
1 week ago
0
fix typo Recommand → Recommend caught by linting.
#151
emollier
opened
1 month ago
0
For multiple samples, why should cuteSV be run twice?
#150
jahemker
opened
1 month ago
1
Does cuteSV only call the inter-chromosome translocation?
#149
hui-liu
closed
2 months ago
1
cuteSV with ONT amplicon data
#148
ctarpey
opened
2 months ago
1
zero position in vcf
#147
baozg
closed
2 months ago
4
add reference path for processing .cram files
#146
fangli80
closed
4 months ago
0
Does `--batches` affect output?
#145
dennishendriksen
closed
5 months ago
2
Missing quality scores QUAL
#144
schmart95
opened
5 months ago
1
Call SV in multiple sample
#143
lg10is1
opened
6 months ago
1
Q: Detection SV by aligning to diploid (not haplotype resolved) genome
#142
Alteroldis
opened
6 months ago
2
cutcsv only calls indel
#141
HFzzzzzzz
closed
6 months ago
1
Force Calling Error (CuteSV + SURVIVOR)
#140
kchilkert
closed
6 months ago
12
cuteSV fails to output the result due to computational resources
#139
bojan-balic-sbg
opened
7 months ago
1
empty pickle for self mapping
#138
baozg
closed
6 months ago
1
SV with genotype 0/0
#137
vegetableyu
closed
6 months ago
1
cython is required at build time but not install time
#136
tillea
opened
9 months ago
2
Installation fails
#135
pkerbs
opened
9 months ago
5
Question about vcf INFO filed
#134
hyunjokoo
opened
10 months ago
1
Some bases in the “REF” column are incorrect, and this occurs in INS (insertion) types.
#133
wk1352313
opened
10 months ago
1
Update version 2.1.0
#132
Meltpinkg
closed
11 months ago
0
[Question] How are POS, LEN and SEQ of insertions determined
#131
waltergallegog
closed
11 months ago
2
`--min_size` didn't work
#130
baozg
closed
11 months ago
1
Structural variation of species from two different genus
#129
XXboop
closed
1 year ago
0
Supporting gzip ref fasta
#128
baozg
closed
1 year ago
2
repeat at the SV breakpoint
#127
charliechen912ilovbash
opened
1 year ago
4
Confusing read support for a large deletion
#126
wongkarenhy-hex
closed
1 year ago
3
Malformed VCF due to `R` reference base
#124
dennishendriksen
opened
1 year ago
3
Force calling
#123
lunky-zao
closed
1 year ago
0
Force calling
#122
lunky-zao
opened
1 year ago
2
KeyError: 'GL000008.2'
#121
aojielian
opened
1 year ago
3
No SV detection unlike other tools
#120
luneangevin
opened
1 year ago
1
F1 % value, Precision % value, and Recall % value
#119
ghost
opened
1 year ago
1
SV min_size ignored
#118
svenwillger
closed
1 year ago
1
R package
#117
ghost
closed
1 year ago
1
installation error
#116
fangli80
closed
1 year ago
3
Skipping most contigs/reads
#115
danielwood1992
closed
1 year ago
3
Achieve the INV fragments
#114
AndyLy2Zy
opened
1 year ago
13
Length of the output of SVs
#113
jyw-atgithub
closed
1 year ago
7
Run the aligned files from different smrtcells
#112
priyambial123
opened
1 year ago
3
Variants smaller than threshold set
#111
Akazhiel
opened
1 year ago
1
min_size option not working in version 2.0.2
#110
waltergallegog
closed
1 year ago
2
Minor error in bed file for TRA simulation
#109
LYC-vio
closed
1 year ago
3
query about missing genotypes in cuteSV force calling
#108
prasundutta87
closed
1 year ago
1
What's the recommended parameters for assembly-level alignment SV calling
#107
luckyvivi
closed
1 year ago
1
FileNotFoundError: [Errno 2] No such file or directory: '/mnt/c/Users/misha/Documents/Forsburg Lab/cuteSV/DEL.sigs'
#106
mishakhm
closed
1 year ago
9
bed file feature
#105
QuentinBoone
opened
1 year ago
5
Modify the sequence of the inserted allele
#104
zhqduan
closed
1 year ago
2
这个软件可以检测拷贝数变异吗？
#103
lqsae
closed
1 year ago
1
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