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`tnrs_match_names` lowercases the string provided by the user in the results, do we need to do this?
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Hi, I am trying to download the BIEN occurrence for a species list, but it does not download the data. Below is an example of what I tried and the error message I got:
_here is the species name lis…
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This affects both OTU mapping and autocomplete. If a taxon is suppressed for purposes of synthesis (e.g. it's a GBIF-only fungus species or incertae sedis), it still shows up as available for OTU mapp…
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I'm working through an example with 100,000s of names.
To easily recover the names I use data.frame input from the package.
Because there are many names, some of them may be empty, but they do corre…
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Taxon rank displays as both "genus" and "Genus". Check all rank indicators and standardize capitalization.
Example:
ID Name_submitted Overall_score Name_matched_id Name_matched Name_score Name_mat…
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I'm encountering a problem using ```inspect()``` in that, whether or not I provide ```taxon_name``` or ```row_number```, ```inspect(object,...)``` is returning the incorrect taxon/row.
Based on th…
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```
http://tnrs.iplantcollaborative.org/
There is an api, which we could use to validate plant taxonomy. The service
also provides synonyms to valid names.
Unfortunately there is no higher taxonomy…
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Species records with the same epithet ought to align, even if the genera are different, assuming the genera are siblings (or would be, following a merge).
I believe GBIF does something along these …
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DendroPy [cannot load a phylogeny with duplicate taxon labels](https://github.com/jeetsukumaran/DendroPy/issues/12#issuecomment-65136908), which means that phylo2owl.py can't, either. Fixing this will…
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```
http://tnrs.iplantcollaborative.org/
There is an api, which we could use to validate plant taxonomy. The service
also provides synonyms to valid names.
Unfortunately there is no higher taxonomy…