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I am impressed by your wonderful work. Can you provide a visualization code using the pre-trained model
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Hi,
Could you please advise how tSNE can by replaced by UMAP throughout the workflow?
Many thanks
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openTSNE could be made GPU/CPU-agnostic for potential speed boosts by [using a cupy feature](https://stackoverflow.com/a/76514768/8384910).
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First, thanks for this extremely useful package and detailed explanations on tree metrics and visualizations in treespace as well as assessments of those visualizations.
I have a question about the…
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Thank you very much for sharing the code. I would like to request you to share the 'feature.npy' and 'label.npy' in tsne_visualization.py. I am currently experiencing problems in tsne visualization.
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I am very excited to see such an excellent article. Could you please provide the code for the t-SNE graph?
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add UMAP to requirements ?
what is the way to handle the init gracefully in `ReductionAlgorithm` ?
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Hi, good job, but can you offer more details about tsne? I really do not konw the following code in plot_tsne.py for train?
torch.save(queues, os.path.join(source_dir,'queues_tsne.pkl'))
queues = to…
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The following URL https://www.ebi.ac.uk/gxa/sc/experiments/E-MTAB-6945/results/tsne?colourBy=genotype&plotType=umap&plotOption=20 gives a 400 error for the metadata cell plot:
We suspect that t…
pcm32 updated
1 month ago
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Following are the tSNE enhancements that need to be added.
1. Constraints added in other views should be applied in tSNE views. Only valid points should be shown.
2. Cross-browser support for tSNE. Cu…