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(This question was first raised in the [developmental stage ontologies](https://github.com/obophenotype/developmental-stage-ontologies/pull/102#discussion_r1799308335) repo, but as a side remark on a …
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Playing with your ROBOKOP instance, I noticed two things and would like to suggest some improvements for increased provenance transparency.
Use `primary_knowledge_source` only ever for the very ori…
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```
2,pos_out_of_seq_range,human_proteoform_glycosylation_sites_embl
32,pos_out_of_seq_range,mouse_proteoform_glycosylation_sites_embl
365,aa_mismatch,mouse_proteoform_glycosylation_sites_embl
50,…
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Looking at OBO, looks like Uberon is the best source of compliant anatomy classes. I propose that we add the following:
Starting with BFO material entity, then add:
- material anatomical entity
…
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# Statement of problem
Data are often associated with organs at a high level of specificity--e.g., with the left lung. It should be possible to organize data by organ hierarchically. In addition, the…
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**Uberon term**
UBERON_0006174 pronephric sinus
**Bug description**
UBERON_0006174 pronephric sinus is causing some reasoning problems in GO (https://github.com/geneontology/go-ontology/issues/…
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In Uberon we have the following terms: `dorsal thalamus`, `ventral thalamus` and `dorsal plus ventral thalamus`.
`dorsal plus ventral thalamus` has a broad synonym `thalamus`, and there isn't a term …
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HsapDv is not properly mappable to Uberon. Because we have:
```
HsapDv:0000086 adolescent stage
HsapDv:0000087 human adult stage
po HsapDv:0000088 human early adulthood stage
po HsapDv:0000…
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**Uberon term**
`UBERON:0011924 ! postganglionic autonomic fiber`
`UBERON:0011925 ! preganglionic autonomic fiber`
**Bug description**
There is a subClassOf axiom to `UBERON:0003041 ! trigeminal…
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**Uberon term**
quadriceps femoris (UBERON_0001377)
with
rectus femoris (UBERON:0001378), vastus lateralis (UBERON:0001379), vastus medialis (UBERON:0001380), and vastus intermedius (UBERON:001…