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RobokopU24
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ORION
Code that parses datasets from various sources and converts them to load graph databases.
MIT License
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Update loadDrugMechDB.py to include treats edges for indication paths
#264
beasleyjonm
opened
3 days ago
0
updating HGNC file location and version date for new HGNC set up
#263
EvanDietzMorris
closed
3 days ago
0
Bump mysql-connector-python from 8.4.0 to 9.1.0
#262
dependabot[bot]
closed
3 days ago
0
Several hundred treats edges missing from DrugCentral ingest
#261
marcello-deluca
opened
1 month ago
0
Add in all Monarch KG edge properties on ingest.
#260
DnlRKorn
opened
1 month ago
0
Made change to make versioning of Monarch KG ingests dynamic.
#259
DnlRKorn
opened
1 month ago
0
Pathoplexus Potential New Data Source
#258
TereseCamp
closed
1 month ago
0
Monarch KG "negated" edges not ingested properly
#257
DnlRKorn
opened
1 month ago
0
Add "target_for" edges from loadPHAROS.py
#256
beasleyjonm
closed
1 month ago
1
In PHAROS, create a biolink:target_for edge between gene-disease associations with DrugCentral Indication as data source.
#255
beasleyjonm
opened
2 months ago
1
GTeX source data file not being downloaded
#254
beasleyjonm
opened
2 months ago
0
MonarchKG Hardcoded to specific version
#253
DnlRKorn
opened
2 months ago
0
Neo4j 5
#252
EvanDietzMorris
closed
2 months ago
0
SIGNOR 3.0 parser. Updated to map SIGNOR phenotypes to GO terms when …
#251
beasleyjonm
opened
2 months ago
3
fixing remnants of data_services
#250
EvanDietzMorris
closed
2 months ago
0
Add ability to record "original_object" and "original_subject" to every association
#249
DnlRKorn
opened
2 months ago
1
biolink:ameliorates_condition is still present in ROBOKOP KG
#248
james0032
closed
2 months ago
1
Reactome and neo4j 5
#247
EvanDietzMorris
opened
2 months ago
0
Added TODO to loadUniRef.py
#246
DnlRKorn
closed
2 months ago
0
Set filenames to be based on object settings in all functions loadHistoneMap.py
#245
DnlRKorn
closed
2 months ago
0
Added TODO to loadPanther.py
#244
DnlRKorn
closed
2 months ago
0
Update loadIA.py
#243
DnlRKorn
closed
2 months ago
0
Fixed regex pattern issue in loadCTD.py
#242
DnlRKorn
opened
3 months ago
0
Added TODO to loadGTEx.py
#241
DnlRKorn
closed
2 months ago
0
Dynamically load latest version of GenomeAlliance data
#240
DnlRKorn
opened
3 months ago
0
Update loadFDB.py
#239
DnlRKorn
closed
2 months ago
0
Signor development
#238
beasleyjonm
closed
2 months ago
0
Fix for get_latest_source_version being called unnecessarily.
#237
DnlRKorn
opened
3 months ago
1
get_latest_source_version() being called for data sources that aren't needed for graph being built.
#236
DnlRKorn
opened
3 months ago
1
redundant attributes
#235
cbizon
opened
3 months ago
0
Updated parser and data_sources.py to begin testing SIGNOR parsing.
#234
beasleyjonm
closed
3 months ago
0
Improving the KL/AT in Pharos
#233
eKathleenCarter
closed
3 months ago
0
Modified predicates affected by biolink:binds
#232
eKathleenCarter
closed
3 months ago
0
Update requirements.txt
#231
beasleyjonm
closed
4 months ago
0
Refactored treats edges for DrugCentral to differentiate between indi…
#230
beasleyjonm
closed
3 months ago
2
Bump requests from 2.31.0 to 2.32.0
#229
dependabot[bot]
closed
5 months ago
0
Deployment updates
#228
EvanDietzMorris
closed
5 months ago
0
Graph Spec improvements
#227
EvanDietzMorris
opened
5 months ago
2
Modify KL and AT in PHAROS
#226
eKathleenCarter
closed
3 months ago
0
Subclass loops and qualifier merging
#225
EvanDietzMorris
closed
5 months ago
0
Fixed broken link for SGD Gene2GOTerm download file.
#224
beasleyjonm
closed
5 months ago
0
code improvement for DrugMechDB
#223
eKathleenCarter
opened
5 months ago
0
Biolink Model usage
#222
EvanDietzMorris
opened
5 months ago
0
A PR with way too many things in it
#221
EvanDietzMorris
closed
5 months ago
1
Update loadKinAce.py
#220
beasleyjonm
closed
1 month ago
6
DrugMechDB parsing of full database
#219
beasleyjonm
closed
5 months ago
5
Updated parser to parse every edge in the original db.
#218
beasleyjonm
closed
6 months ago
0
Add qualified_predicates
#217
cbizon
closed
6 months ago
2
looking at conflicts
#216
EvanDietzMorris
closed
7 months ago
0
Multiomics Parsers Added
#215
GitHubbit
closed
5 months ago
0
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