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Hi,
I read through the workflow and found there are scaling involved. I am wondering are there some place to obtain the common units of interest for RNAseq such as TPM, FPKM in your workflow? Thank…
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### Prerequisites
- [X] I have carried out troubleshooting steps and I believe I have found a bug.
- [X] I have searched for similar bugs in both open and closed issues and cannot find a duplicate.
…
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Hello and thanks for developing this model. I read in the supplemental materials that the G x S matrix for RNAseq data should be filtered for low counts, normalized, and also log2 transformed before r…
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Hi,
I get the following problem at the limmc plot stage
Attaching package: 'limma'
The following object is masked from 'package:BiocGenerics':
plotMA
null device
1
nu…
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I think a GitHub workflow that creates and publishes all the images needed will ease up deployment.
No need to build the database images and no need to clone the repo.
Just a simple compose file and t…
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### Seurat normalization:
Normalize to total umi
> After removing unwanted cells from the dataset, the next step is to normalize the data. By default, we employ a global-scaling normalization meth…
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_In followup to #44 & #70:_
## Minimum feature request:
Please implement a solution to make Leon able remove a specific set of parameters from URLs, like
* clever*
Many websites use same analy…
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## Description
Generally speaking we need to update the error page communication to omit mentions of the Chrome brand, chrome support links and chrome iconography across the board. This encompasses …
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It is easy to get items in the cart which shouldn't be in there.
When should items be validated
- Before placing an order
- Before adding / updating
- On every request?? - can probably avoid this
W…
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### 🐛 Describe the bug
I need a fine learning rate variation over the minibatches in my training loop. Hence I do the following:
```python
import numpy as np
import torch
from torch.nn import…