YosefLab ImpulseDE2 issues

YosefLab / ImpulseDE2

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ImpulseDE2 troubleshooting

#42 av894 opened 5 months ago
0
Error in if (class(matCountData) == "SummarizedExperiment") { : the condition has length > 1

#41 DUAN-GAO opened 1 year ago
0
Packages removed with Bioconductor 3.16 release

#40 YU-LIN96 opened 1 year ago
1
Question about removing continuous confounders

#39 lovebaboon1989 opened 1 year ago
0
Errors when running the vignette examples

#38 amdreamer closed 1 year ago
1
Questions about how to identify the expression pattern into Up/Down category

#37 lovebaboon1989 opened 1 year ago
0
Using ImpulseDE2 to analyze DNA methylation data

#36 lovebaboon1989 opened 1 year ago
2
ImpulseDE2 for count data, v0.99.10 # Process input Error in checkCounts(matCountData, "matCountData") : ERROR: matCountData contains non-integer elements. Requires count data. Timing stopped at: 0.052 0.005 0.057

#35 Barbarak17 closed 1 year ago
1
Update ImpulseDE2_main.R

#34 svigneau closed 2 years ago
2
Unable to run successfully

#33 michael-mazzucco closed 2 years ago
2
More than 2 conditions in dfAnnotation to compare

#32 lovebaboon1989 opened 2 years ago
2
Error in if (class(matCountData) == "SummarizedExperiment") { : the condition has length > 1

#31 rotemavr closed 2 years ago
6
installation problem in R4.1.1

#30 wangpenhok opened 2 years ago
6
Error fitting Impulse model

#29 mallorymaynes opened 2 years ago
4
Normalization/Log2 transformation requirements

#28 mallorymaynes opened 3 years ago
4
Comparison of model parameters without time

#27 Balays opened 3 years ago
0
Random effect/paired samples?

#26 mayanbriller opened 3 years ago
1
Fit lines do not follow the sample points in plotGenes

#25 dosshra opened 3 years ago
1
No points in plotGenes

#24 dosshra opened 3 years ago
4
"plotGenes" plots fits but not data in "case" mode

#23 mchimenti opened 3 years ago
1
Bioconductor deprecation warning!

#22 janstrauss1 opened 3 years ago
1
plotHeatmap Rownames

#21 AQPH222 opened 4 years ago
6
How to obtain and supply dispersion estimates for multiple batch effects

#20 rjoyce-projects opened 4 years ago
0
DESeqDataSet,design

#19 ytao0210 closed 4 years ago
0
Data Format：num

#18 ytao0210 closed 4 years ago
0
How do you annotate the heatmap ?

#17 Fu-Luo opened 4 years ago
0
Case-control heatmaps

#16 mikefors08 opened 4 years ago
1
RNA-seq data without replicate

#15 nachoryu opened 4 years ago
4
computeModelFits error : invalid argument to unary operator

#14 gomeznick86 opened 4 years ago
4
rownames in dfAnnotation

#13 Janderscan opened 4 years ago
5
Impulse parameters don't seem to fit?

#12 nicolerg closed 4 years ago
7
How can I extract impulse model parameters?

#11 nicolerg closed 4 years ago
1
runImpulseDE2 and SVA

#10 gianfilippo closed 4 years ago
2
ImpulseDE2 with paired case/control

#9 jchariker closed 4 years ago
5
TimeCateg error

#8 jchariker closed 4 years ago
5
Error when running runImpulseDE2

#7 ClemensKohl closed 5 years ago
3
Wrong library size normalization ImpulseDE2_plotGenes.R

#6 mplass closed 5 years ago
1
Results table: although significant both is.Transient and is.Monotonous = FALSE

#5 PsoAE opened 5 years ago
1
Error in checkNumeric(dfAnnotation$Time, "dfAnnotation$Time") : ERROR: dfAnnotation$Time contains non-numeric elements. Requires numeric data

#4 senaj opened 5 years ago
1
How to extract the expression profile after batch correction?

#3 YiweiNiu opened 6 years ago
0
Clustering_results

#2 lcastro-bioinfo closed 5 years ago
1
scaNProc / Parallelization / multi-thread

#1 ghost opened 7 years ago
1