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Hi @shaunpwilkinson,
Returning to your fine package here, I encounter an error, when running code, which previously ran fine:
`Error in FUN(X[[i]], ...) : invalid byte for class 'AAbin'`
The er…
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```
We should add a tutorial on using a ViterbiClassifier,
OutcomeFeatureExtractors, etc.
```
Original issue reported on code.google.com by `steven.b...@gmail.com` on 12 Feb 2012 at 4:46
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The naive diploid Viterbi algorithm doesn't scale well with the number of reference haplotypes, slowing testing (#65). @astheeggeggs suggested an alternative implementation that "merges" partial ances…
szhan updated
2 months ago
-
```
We should add a tutorial on using a ViterbiClassifier,
OutcomeFeatureExtractors, etc.
```
Original issue reported on code.google.com by `steven.b...@gmail.com` on 12 Feb 2012 at 4:46
-
```
We should add a tutorial on using a ViterbiClassifier,
OutcomeFeatureExtractors, etc.
```
Original issue reported on code.google.com by `steven.b...@gmail.com` on 12 Feb 2012 at 4:46
-
```
We should add a tutorial on using a ViterbiClassifier,
OutcomeFeatureExtractors, etc.
```
Original issue reported on code.google.com by `steven.b...@gmail.com` on 12 Feb 2012 at 4:46
-
```
We should add a tutorial on using a ViterbiClassifier,
OutcomeFeatureExtractors, etc.
```
Original issue reported on code.google.com by `steven.b...@gmail.com` on 12 Feb 2012 at 4:46
-
```
We should add a tutorial on using a ViterbiClassifier,
OutcomeFeatureExtractors, etc.
```
Original issue reported on code.google.com by `steven.b...@gmail.com` on 12 Feb 2012 at 4:46
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Hi,
I am confused wrt lines 26 and 27 of the viterbi implementation:
` trellis[:, t] = (trellis[:, t-1, None].dot(self.Obs(obs[t]).T) * self.transProb).max(0)
backpt[:, t] = (np.tile(t…
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Some tests for the naive diploid Viterbi implementations are rather slow when the reference panel includes ancestral haplotypes and gets moderately large. For example, the tests took ~40 minutes to co…
szhan updated
2 months ago