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Something seemed to have changed around Singularity v4 that prevents Singularity from pulling images that are too old:
```
$ singularity --version
singularity-ce version 4.0.3-jammy
$ singularity …
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The restructured pipeline in this repo is called now as automatic genome-sequence analysis pipeline or agape for short, presented the following major changes based on the main repo:
Use a unified d…
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See discussion at https://github.com/dockstore/dockstore/issues/5594
We believe this is a general issue for TRS.
i.e. workflows with a structure like
```
workflows
|- wgs
| - main.wdl
tasks
…
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WDL 1.1 says that tasks can be [specified to need GPUs](https://github.com/openwdl/wdl/blob/main/versions/1.1/SPEC.md#gpu):
> ```wdl
> task gpu_test {
> #.....
> runtime {
> gpu: true
> }
>…
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2GB of RAM ain't enough when your FASTQ files are >11GB in size, like from a NovaSeq.
This line:
https://github.com/theiagen/public_health_viral_genomics/blob/main/tasks/quality_control/task_fa…
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Currently, the WDL input compound type ```Map[]``` is not handled by the translator. (https://github.com/openwdl/wdl/blob/main/versions/1.1/SPEC.md#mapp-y)
~~A workflow using Maps is given in this …
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In several immuno.wdl runs we have encountered errors during the localization step.
These errors look something like this:
```
Sep 02 11:31:08 malachi-immuno-5120-34 java[12774]: 2024-09-02 11:…
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Seems like a duplicate of #404
I am trying to run the viral workflow from the [docs](https://miniwdl.readthedocs.io/en/latest/getting_started.html#getting-started).
However the workflow is fail…
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I'm encountering an error while working with a WDL (Workflow Description Language) script. The error message is as follows:
```
```ERROR: Unexpected symbol (line 8, col 5) when parsing 'setter'.
…
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Cromwell supports imports from sub-directories tasks and structs via a zip file.
This issue is for an enhancement to support this functionality.
Update to Dockerfile could be similar to:
`COPY de…