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Hi,
When I ran "/path/to/HapHiC/haphic plot out_JBAT.FINAL.agp HiC.filtered.bam", a very Hi-C contact maps appeared. Oddly, this is not the case in Juicebox.
[contact_map.pdf](https://github.com/…
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**Github username:** @https://github.com/maarcweiss
**Submission hash (on-chain):** 0x6bddb0c819575a51ced25c0fffb628214677f641f66c532e0c3b43e5a6b7d969
**Severity:** medium severity
**Description:…
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hi yufanzhou
your method is very useful . but i have a little question. the juicer's result, like "resule.hic", whether it can be deal with HiSIF.
if it can , how shou i do ?
i will …
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Hello @lh3 @tanlongzhi ,
I know that we can convert .con to .hic file in the dip-c repository, but Is there a way to get the genome wide contact matrix in .npy or related matrix format at different…
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曾老师，您好！
我最近在组装一个小麦品种基因组，草图是用hifiasm软件组装得到的，下游HiC挂载用的是p_ctg.g组装版本。Hic数据比对用的是您推荐的bwa mem流程，挂载用的是One-line command，可以得到较好的挂载结果，21条染色体。用juicerbox对一些易位和倒位拼装错误进行了手动矫正，但重新画图后发现很多修改没有变化，重新画图代码：~/software/HapH…
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Fetch reconfig data from api endpoint
display in nice diff viewer we made before (this fetches the current Juicebox funding cycle data and compares)
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Hi,
What are the differece between v1.2 (git clone from github source and compiled) and v1.2a.1( install using conda)?
I got differece results using these two version, it seem that v1.2 (git clo…
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https://en.wikipedia.org/wiki/Decentralized_autonomous_organization
DAO Canon: https://future.com/dao-canon/
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Hi Xiaofei,
Thanks so much for the great tools! The flexibility and efficiency of HapHiC have been incredibly impressive and have significantly streamlined my workflow.
I have a question regarding …
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Hi,
Thanks for your nice tool.
I can see all 13 chromosomes in juicebox. After running PlotHicGenome with the following command line; only 12 chromosomes were displayed in the plot.
My command…