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lh3
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hickit
TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C
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On the issue of duplicated chromosomes
#38
HanwenZhu98
opened
6 months ago
1
Help with bulk Hi-C data
#37
jeff-godwin
closed
1 year ago
1
How to Call Tads
#36
licx11
closed
11 months ago
0
Gaining intuition/information about script key word arguments.
#35
Xparx
opened
1 year ago
0
hickit-gl --view generate very small figure
#34
Xparx
closed
1 year ago
3
Dip-c included ?
#33
Xparx
closed
1 year ago
3
Can we reconstruct the 3dg format file without merging bead
#32
1eilei
opened
2 years ago
6
hickit-gl Error
#31
1eilei
closed
2 years ago
0
Clarification on `seg` format
#30
b2jia
closed
2 years ago
3
Possibility to use hickit for bulk Hi-C modelling?
#29
TerezaClarence
opened
2 years ago
1
output missing coordinates
#28
lidaof
closed
3 years ago
8
hickit.js error
#27
shiyi-pan
opened
3 years ago
4
help with understanding how the coordinates are updated
#26
tarak77
closed
3 years ago
4
_hic_resolve_frag: rev = !rev
#25
xiaqimin
opened
4 years ago
3
hickit.js:457: Error
#24
chenggang108
opened
4 years ago
35
Do you recommend bwa mem with or without the -5 option for aligning normal hi-c data
#23
jelber2
closed
4 years ago
2
Where can I find the algorithmic details?
#22
renxwise
closed
4 years ago
7
hk_parse_seg error
#21
bredeson
opened
5 years ago
9
Error while trying to convert 3dg file
#20
DS57
opened
5 years ago
2
README: remove PARs for males
#19
tanlongzhi
closed
5 years ago
0
how to calculate RMSD using hickit
#18
zhang-jiankun
closed
5 years ago
2
What are the essential differences between bulk hic and single cell hic using hickit to build 3D model
#17
kainblue
opened
5 years ago
0
compiling error
#16
zhang-jiankun
closed
5 years ago
5
allotetraploid genome with HiC
#15
mictadlo
opened
5 years ago
0
Forgot to mention the sex of the samples
#14
tarak77
opened
5 years ago
6
Memory requirement and running on cluster?
#13
tarak77
opened
5 years ago
4
--all-close-leg to remove all close-legged contacts regardless of str…
#12
tanlongzhi
closed
5 years ago
0
/usr/bin/env: k8: No such file or directory?
#11
tarak77
closed
5 years ago
2
-M to skip bead merging
#10
tanlongzhi
closed
5 years ago
0
Obtaining genome wide contact matrix file in .npy/related format?
#9
tarak77
opened
5 years ago
24
fixed typo in readme about mapping normal reads
#8
tanlongzhi
closed
5 years ago
0
added tips for sex, especially female, to readme
#7
tanlongzhi
closed
5 years ago
0
simple merging of duplicates' phases
#6
tanlongzhi
closed
5 years ago
0
Analyzing diploid mESC data from Nagano et al. (2017)
#5
tarak77
closed
5 years ago
25
bug fixes in io
#4
tanlongzhi
closed
5 years ago
1
Working on my haploid dataset
#3
tarak77
closed
5 years ago
46
Remove unnecessary null pointer checks
#2
elfring
closed
5 years ago
1
Completion of error handling
#1
elfring
closed
5 years ago
1