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For context, read https://github.com/monarch-initiative/mondo/issues/7425
What we need:
A simple three column ROBOT template
| mondo_id | linkout | source |
| ---------- | ------- | ------ |…
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Per convo in A&A Monarch Huddle on Feb 13, 2024
@cmungall says: we should have a bank of test profiles (e.g. tracked in yaml in github) with annotations of what we expect the results to be. Test th…
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related to #12
we should low atomic ontologies (ie include inter-ontology axioms but no imports) in monarch chain
@balhoff can you link to proposal here?
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```bash
$> monarch run
Using flutter sdk at C:\src\flutter\bin\flutter
Downloading the Monarch UI for this project's flutter version...
We could not find a compatible Monarch UI for this vers…
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I'm hitting this problem with generated python classes for the biolink model. It looks like it doesn't recognize that GeneOrGeneProduct is a mixin of Gene.
In the biolink model, Gene is defined wi…
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When generating from a swagger document that uses a relative URL for host, the initialize sets the base URL without saying that it should be UriKind.Relative or possibly UriKind.RelativeOrAbsolute
…
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Add OMIA species-specific genetic diseases using NCBIGene ids.
See spreadsheet: https://docs.google.com/spreadsheets/d/1aKuKc2yKy4Z1_yzntsOSi-Z-2V_AMKdmcwOZsVpUwtM/edit#gid=1157876657 'Species specif…
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Model genes may not always have a prose summary available. It may be useful to fetch the summary for any available ortholog, with the explicit warning that the summary may not be exactly relevant for …
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A very common thing users might want to do is to compute the semantic similarity between nodes in a graph and then store that data back in the edges of the graph (to use as edge weights later).
I'v…
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## Sub-task list
- [ ] 1. New OMIM ingest process
- [ ] 2. Descriptions of source files
## Sub-task details
### 1. New OMIM ingest process
In last Mondo Friday meeting, [was written](https://d…