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monarch-initiative
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omim
Data ingest pipeline for OMIM.
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GitHub Action for builds: Quick QC check for `review.tsv`
#170
joeflack4
opened
2 days ago
0
Add MIM type exceptions to `review.tsv`
#169
joeflack4
opened
2 days ago
0
"Alternative symbol" synonyms & "Formerly" - props rename
#168
joeflack4
opened
3 days ago
0
`MONDO:omim_included` rename
#167
joeflack4
opened
3 days ago
0
Disease-Gene: Self-referential cases
#166
joeflack4
opened
6 days ago
1
Test: Disease-Gene pipeline
#165
joeflack4
opened
6 days ago
0
Utilize `review.tsv`
#164
joeflack4
opened
2 weeks ago
4
Analyze `clean_label()` results (Roman numerals, etc)
#163
joeflack4
opened
2 weeks ago
3
add section to list removed digenic diseases
#162
twhetzel
closed
2 weeks ago
0
Create gold standard list of disease defining diseases from OMIM files
#161
twhetzel
closed
2 weeks ago
0
Analyze OMIM files
#160
twhetzel
closed
2 weeks ago
3
ODK Upgrade
#159
joeflack4
opened
3 weeks ago
0
Bug fix: Disease-gene associations
#158
joeflack4
closed
6 days ago
1
The `omim.sssom.tsv` file contains MONDO<->OMIM mappings to obsolete OMIM terms
#157
twhetzel
opened
1 month ago
0
Gene association representation in `omim.ttl`
#156
twhetzel
closed
6 days ago
8
Does `, FORMERLY` indicate `owl:deprecated`?
#155
joeflack4
opened
1 month ago
0
Add `subProperty` `synonymType` declarations
#154
joeflack4
opened
2 months ago
0
Abbreviation recasing: use all abbreviations
#153
joeflack4
opened
2 months ago
0
Title cleaning updates
#152
joeflack4
opened
2 months ago
0
Refactor OWL restrictions
#151
joeflack4
closed
4 weeks ago
0
GH action for tests: Run on PR & push to `main`
#150
joeflack4
opened
2 months ago
0
GH action for builds: Run tests after
#149
joeflack4
opened
2 months ago
0
Grouping: Tests
#148
joeflack4
opened
2 months ago
0
OMIM: Upgrade test suite
#147
joeflack4
opened
2 months ago
0
Annotation prop declaration refactor & `oio` refactor
#146
joeflack4
closed
2 months ago
0
Auto declare annotation props, or test for them
#145
joeflack4
opened
2 months ago
0
Bug fix: `mondo#ABBREVIATION` -> `OMO:0003000`
#144
joeflack4
closed
2 months ago
2
DO NOT MERGE - Roman numeral cleaning, etc, analysis
#143
joeflack4
closed
2 months ago
0
Roman numeral cleaning analysis
#142
joeflack4
closed
2 months ago
0
"Included" symbols: Strip `, INCLUDED`
#141
joeflack4
opened
2 months ago
0
"Included" symbols: Decide what to do
#140
joeflack4
opened
2 months ago
3
"Alternative symbols": `oio:exactSynonym` & `mondo#abbreviation`
#139
joeflack4
opened
2 months ago
0
Alt. 'Formerly' titles/symbols: `oio:exactSynonym` & `MONDO:omim_formerly`
#138
joeflack4
opened
2 months ago
0
'Formerly' titles/symbols: strip `, FORMERLY`
#137
joeflack4
opened
2 months ago
0
Refactor 'mondo#included' URI ref
#136
joeflack4
closed
2 months ago
0
Delete 'issues JSON'
#135
joeflack4
closed
2 months ago
0
DRYify CURIE maps / namespaces
#134
joeflack4
opened
2 months ago
0
Mondo namespace update
#133
joeflack4
closed
2 months ago
0
"Alternative symbol" synonyms & "Formerly"
#132
joeflack4
opened
2 months ago
1
Redundant?: `exactSynonym` copies of labels
#131
joeflack4
closed
2 months ago
1
Bug fix: Multiple abbreviations & incorrect casing
#130
joeflack4
closed
2 months ago
1
Capitalization of detected symbols in "Alternative title(s)" and "Included title(s)" may be incorrect
#129
joeflack4
opened
2 months ago
0
The symbol value from "Preferred Title; symbol" should have a synonym type of abbreviation
#128
joeflack4
closed
2 months ago
0
Bug: `run.sh` not working: `ModuleNotFoundError`
#127
joeflack4
opened
2 months ago
11
Bug: Symbols not always uppercase
#126
joeflack4
closed
2 months ago
5
Multiple abbreviations not handled correctly
#125
joeflack4
closed
2 months ago
2
Update mimTitles parsing
#124
joeflack4
closed
2 months ago
0
IO misc refactoring & upgrades
#123
joeflack4
closed
2 months ago
1
Refactor string ops to `pandas`
#122
joeflack4
opened
2 months ago
0
Change HGNC URI prefix
#121
matentzn
closed
2 months ago
2
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