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Please perform the following updates:
| operation | file/folder | path on dcc-proxy | path on portal |
----------|--------------------|------------|-----
| remove | Description_of_tests_on_synt…
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I found two samples that have a non-zero TMB but have a "blank" in the column "Number of mutations" (when the mut_somatic.maf does have 6 mutations each). So this may not be a bug necessarily dependin…
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Hi
My samples are two groups of responders to chemotherapy and non_responders
Ideally I would need two pictures from these groups to compare the signature like below
![Non_responders svg](htt…
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Hi
I have obtained mutational signature from my samples like below
![Rplot09](https://user-images.githubusercontent.com/43682980/76427967-83a3a300-6359-11ea-970e-bcfd8f47f493.png)
![Rplot10…
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#### What analysis module should be updated and why?
All modules that have plots with colors.
We should probably prioritize plots that will be in the main document? But we probably want the unifi…
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EDIT with a checklist of tools
- [ ] [ExpansionHunter](https://github.com/Illumina/ExpansionHunter) for estimating repeat sizes
- [ ] [QDNAseq](https://github.com/ccagc/QDNAseq) CNVs for shallow W…
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Hi,
I want to plot kataegis plot, and I know I can use a function from here http://genomicsclass.github.io/book/pages/bioc2_rainfall.html
but it would be very useful to include it in the maftools.
…
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Dear @funnell,
MultiModalMuSig.jl package uses a very ingenious generative model to design the dependency among all latent variables. But I'm curious about the strategy to estimate the latent varia…
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#### What data file(s) does this issue pertain to?
The effective genome BED ranges should be added to v13 data release.
These [files are created in snv-callers for TMB calculations](https://githu…
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Summary of druggable/actionable genes via mutation, over-expression, fusion, synthetic lethality and actionable features i.e. TMB, mutational signatures, PD-L1 expression, etc..across the PBTA. Analys…